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(newest | oldest) View (newer 500 | older 500) (20 | 50 | 100 | 250 | 500)- 09:43, 8 November 2017 Goncalo talk contribs uploaded File:666.2017.12 - Kinship Coefficients.pdf
- 08:59, 1 November 2017 Goncalo talk contribs uploaded a new version of File:666.2010.01 - Power of Genomewide Studies.pdf
- 04:26, 1 November 2017 Goncalo talk contribs uploaded File:666.2010.01 - Power of Genomewide Studies.pdf
- 08:10, 23 October 2017 Goncalo talk contribs uploaded File:666.Worksheet 4.pdf
- 08:03, 23 October 2017 Goncalo talk contribs uploaded File:666.Worksheet 3.Solution.pdf
- 08:03, 23 October 2017 Goncalo talk contribs uploaded File:666.Worksheet 2.Solution.pdf
- 08:02, 23 October 2017 Goncalo talk contribs uploaded File:666.Worksheet 1.Solution.pdf
- 02:19, 23 October 2017 Goncalo talk contribs deleted page 666 Problem Set 1 (content was: "= Question 1: Sex difference in allele frequencies = Consider a population where allele frequencies differ between the sexes. Focus...", and the only contributor was "Goncalo" (talk))
- 02:09, 23 October 2017 Goncalo talk contribs restored page 666 Problem Set 1 (1 revision restored)
- 08:49, 11 October 2017 Goncalo talk contribs uploaded File:666.2017.10 - Advanced Haplotyping.pdf
- 08:36, 9 October 2017 Goncalo talk contribs uploaded File:666.2017.09 - Haplotype Estimation.pdf
- 08:33, 4 October 2017 Goncalo talk contribs uploaded File:666.SampleMidterm.pdf
- 07:10, 4 October 2017 Goncalo talk contribs uploaded File:666.2017.08 - The E-M Algorithm.pdf
- 07:08, 4 October 2017 Goncalo talk contribs uploaded File:666.Worksheet 3.pdf
- 06:48, 2 October 2017 Goncalo talk contribs uploaded File:666.2017.07 - Maximum Likelihood Estimation.pdf
- 08:24, 27 September 2017 Goncalo talk contribs uploaded File:666.2017.06 - More Advanced Coalescent Models.pdf
- 08:23, 27 September 2017 Goncalo talk contribs uploaded a new version of File:666.Worksheet 2.pdf
- 08:23, 27 September 2017 Goncalo talk contribs uploaded File:666.Worksheet 2.pdf
- 08:25, 25 September 2017 Goncalo talk contribs uploaded File:666.2017.05 - Coalescent and Allele Counts.pdf
- 05:53, 18 September 2017 Goncalo talk contribs uploaded File:666.04 - The Coalescent.pdf
- 07:57, 13 September 2017 Goncalo talk contribs uploaded File:666.Worksheet 1.pdf
- 07:51, 13 September 2017 Goncalo talk contribs uploaded File:666.2017.03 - Linkage Disequilibrium.pdf
- 08:32, 11 September 2017 Goncalo talk contribs uploaded File:666.2017.01 - Introductory Lecture.pdf
- 04:44, 11 September 2017 Goncalo talk contribs uploaded File:666.2017.02 - Hardy Weinberg Equilibrium.pdf
- 08:39, 11 April 2017 Goncalo talk contribs uploaded File:2017.04 - Adventures in Human Genetics.pdf
- 08:10, 25 March 2017 Goncalo talk contribs uploaded File:Question Sheet - 2017 - Liu et al (2013) Nature Genetics.pdf
- 08:07, 25 March 2017 Goncalo talk contribs uploaded File:Question Sheet - 2017 - Wu et al (2011) American Journal of Human Genetics.pdf
- 19:10, 19 March 2017 Goncalo talk contribs uploaded File:Question Sheet - 2017 - Kang et al (2010) Nature Genetics .pdf (Introduction to linear mixed models for GWAS.)
- 10:50, 30 January 2017 Goncalo talk contribs uploaded File:Question Sheet - Boehnke and Cox (1997) AJHG.pdf
- 09:58, 25 January 2017 Goncalo talk contribs uploaded File:01. Genotype Imputation.pdf
- 09:58, 25 January 2017 Goncalo talk contribs uploaded File:00. Warm-up to Genomewide Analyses.pdf
- 09:35, 19 January 2017 Goncalo talk contribs uploaded File:866 - Slides for Hyun.pdf
- 09:04, 19 January 2017 Goncalo talk contribs uploaded File:Question Sheet - Delaneau et al (2013) Nature Methods.pdf
- 11:12, 28 January 2016 Goncalo talk contribs uploaded File:Chr20.1000G.EUR.330k.vcf.gz
- 13:05, 12 December 2014 Goncalo talk contribs uploaded File:2014.12 - Workshop Closing.pdf
- 05:27, 8 December 2014 Goncalo talk contribs uploaded File:2014.12 - Workshop Introduction.pdf
- 05:16, 8 December 2014 Goncalo talk contribs uploaded File:Question Sheet - Kang et al (2010) Nature Genetics.pdf
- 14:44, 3 December 2014 Goncalo talk contribs deleted page RareMETAL Quick Start (content was: "to be constructed ..." (and the only contributor was "Shuang Feng"))
- 14:43, 3 December 2014 Goncalo talk contribs deleted page Please Delete This Page (content before blanking was: "")
- 03:41, 1 December 2014 Goncalo talk contribs uploaded a new version of File:Question Sheet - Liu et al (2013) Nature Genetics.pdf (Update with volume and page numbers.)
- 04:28, 24 November 2014 Goncalo talk contribs uploaded File:Question Sheet - Kircher et al (2014) Nature Genetics.pdf
- 04:27, 24 November 2014 Goncalo talk contribs uploaded File:Question Sheet - Albers et al (2010) Genome Research.pdf
- 19:29, 26 October 2014 Goncalo talk contribs uploaded a new version of File:Question Sheet - Iqbal et al (2012) Nature Genetics.pdf (Removed dependency on Zerbino and Birney (Velvet) paper, so as to allow more flexibility in scheduling.)
- 21:09, 18 September 2014 Goncalo talk contribs uploaded File:Question Sheet - Menelaou et al (2013) Bioinformatics.pdf
- 11:01, 20 June 2014 Goncalo talk contribs uploaded File:2014.06 - Workshop Closing.pdf
- 05:30, 16 June 2014 Goncalo talk contribs uploaded File:2014.06 - Abecasis Workshop Introduction.pdf
- 16:08, 6 December 2013 Goncalo talk contribs uploaded File:Question Sheet - Jun et al (2012) American Journal of Human Genetics.pdf
- 13:29, 4 December 2013 Goncalo talk contribs uploaded File:Question Sheet - Wu et al (2011) American Journal of Human Genetics.pdf
- 17:55, 26 November 2013 Goncalo talk contribs uploaded File:Question Sheet - Liu et al (2013) Nature Genetics.pdf
- 16:01, 25 November 2013 Goncalo talk contribs uploaded File:Question Sheet - Li and Durbin (2011) Nature.pdf
- 16:09, 12 November 2013 Goncalo talk contribs uploaded File:Question Sheet - Iqbal et al (2012) Nature Genetics.pdf
- 04:00, 7 November 2013 Goncalo talk contribs uploaded a new version of File:Question Sheet - Zerbino and Birney (2008) Bioinformatics.pdf (Removed unnecessary second page.)
- 03:58, 7 November 2013 Goncalo talk contribs uploaded a new version of File:Question Sheet - Li and Durbin (2009) Bioinformatics.pdf (Fixed typos in code example.)
- 03:57, 7 November 2013 Goncalo talk contribs uploaded File:Question Sheet - Zerbino and Birney (2008) Bioinformatics.pdf
- 12:19, 30 October 2013 Goncalo talk contribs uploaded File:Question Sheet - Li and Durbin (2009) Bioinformatics.pdf
- 13:53, 28 October 2013 Goncalo talk contribs moved page 830 - BestAlignment::ClearCache() to 830 - BestAlignment::ClearPositions()
- 05:10, 11 October 2013 Goncalo talk contribs uploaded File:Question Sheet - Li et al (2008) Genome Research.pdf
- 11:13, 3 October 2013 Goncalo talk contribs moved page RAREMETAL-SOFTWARE to Rare Variant Analysis and Meta-Analysis
- 14:31, 2 October 2013 Goncalo talk contribs moved page 830 - Haplotyper::ScoreLeftConditional smart() to 830 - Haplotyper::ScoreLeftConditional() (smart, complicated) (Consistency.)
- 14:33, 25 September 2013 Goncalo talk contribs uploaded File:Question Sheet - Li et al (2010) Gen Epid.pdf
- 14:32, 25 September 2013 Goncalo talk contribs uploaded File:Question Sheet - Howie et al (2012) Nat Genet.pdf
- 14:29, 25 September 2013 Goncalo talk contribs uploaded File:Question Sheet - Browing and Browning (2012) Am J Hum Genet.pdf
- 12:07, 2 August 2013 Goncalo talk contribs uploaded File:2013.07 - Overton Award Final.pdf
- 15:20, 12 June 2013 Goncalo talk contribs uploaded File:Scott Vrieze.jpg
- 10:08, 8 March 2013 User account Dajiang Liu talk contribs was created by Goncalo talk contribs
- 10:07, 8 March 2013 Goncalo talk contribs deleted page File:Raremetalworker.tutorial.tgz (not ready for external distribution)
- 10:07, 8 March 2013 Goncalo talk contribs deleted page File:Raremetal.tutorial.tgz (not ready for external distribution)
- 15:20, 9 January 2013 Goncalo talk contribs uploaded File:Sample-manhattan-plot-B.png
- 15:20, 9 January 2013 Goncalo talk contribs uploaded File:Sample-manhattan-plot-A.png
- 15:19, 9 January 2013 Goncalo talk contribs uploaded File:Sample-manhattan-plot.png
- 17:06, 21 December 2012 User account Chaolong Wang talk contribs was created by Goncalo talk contribs
- 09:19, 5 December 2012 Goncalo talk contribs uploaded a new version of File:666.24.pdf (Minor tweaks)
- 05:22, 3 December 2012 Goncalo talk contribs uploaded a new version of File:666.20.pdf (This version adds a tiny bit more detail on the use of empirical kinship coefficients. )
- 04:43, 3 December 2012 Goncalo talk contribs uploaded a new version of File:666.2012.01.pdf (Added discussion of Lander Waterman results on contig lengths.)
- 14:58, 28 November 2012 Goncalo talk contribs uploaded a new version of File:666.2011.01.pdf (Typo fixes.)
- 09:28, 28 November 2012 Goncalo talk contribs uploaded a new version of File:666.2011.01.pdf (Minor updates (for consistency with new preceding lectures); added references for variable threshold test.)
- 09:37, 26 November 2012 Goncalo talk contribs uploaded File:666.2012.01.pdf (Version zero!)
- 02:07, 21 November 2012 Goncalo talk contribs uploaded a new version of File:666.2011.02.pdf (Minor update; added empirical distribution of read pair distances from QPLOT)
- 02:06, 21 November 2012 Goncalo talk contribs uploaded a new version of File:666.2010.05.pdf (Minor typo fixes)
- 00:32, 14 November 2012 Goncalo talk contribs uploaded a new version of File:666.2010.04.pdf (Minor updates, adding Ion Torrent as a sequencing technology and adding some specific numbers to illustrate the scale of genetic variation that can be reached by sequencing.)
- 06:33, 12 November 2012 Goncalo talk contribs uploaded a new version of File:666.2010.03.pdf (Adds a summary slide.)
- 03:33, 31 October 2012 Goncalo talk contribs uploaded a new version of File:666.17.pdf
- 03:33, 31 October 2012 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Minor typo fix.)
- 03:07, 29 October 2012 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Fixed look of slides with equations.)
- 05:24, 22 October 2012 Goncalo talk contribs uploaded a new version of File:666.2010.02.pdf (Updated lecture to include example from an actual affected sibling pair study. The lecture is still far too long.)
- 06:16, 3 October 2012 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Minor edits.)
- 02:25, 26 September 2012 Goncalo talk contribs uploaded a new version of File:666.10.pdf (Minor tweaks. Now explicitly mentions use of the E-M algorithm to estimate subpopulations and their frequencies or for calling genotype clusters.)
- 23:05, 18 September 2012 Goncalo talk contribs uploaded a new version of File:666.06.pdf
- 08:40, 10 September 2012 Goncalo talk contribs uploaded a new version of File:666.03.pdf (Minor updates.)
- 02:16, 5 September 2012 Goncalo talk contribs deleted page File:2011.666.01.pdf (Deleted old revision 20120905060704!2011.666.01.pdf)
- 02:15, 5 September 2012 Goncalo talk contribs uploaded a new version of File:2011.666.01.pdf (Yet more minor edits, this time listing potential group projects.)
- 02:07, 5 September 2012 Goncalo talk contribs uploaded a new version of File:2011.666.01.pdf (Minor update for 2012, adding more detail to HWE discussion, link to online class notes, and potential discussion of grading scheme)
- 02:02, 5 September 2012 Goncalo talk contribs uploaded a new version of File:2011.666.01.pdf
- 01:07, 5 September 2012 Goncalo talk contribs deleted page 666 Problem Set 6 (Delete old solutions before start of new term!)
- 01:06, 5 September 2012 Goncalo talk contribs deleted page 666 Problem Set 5 (Delete old solutions before start of new term!)
- 01:06, 5 September 2012 Goncalo talk contribs restored page Biostatistics 666: Main Page (85 revisions restored: Fixing accidental deletion.)
- 01:05, 5 September 2012 Goncalo talk contribs deleted page Biostatistics 666: Main Page (Delete old solutions before start of new term!)
- 01:05, 5 September 2012 Goncalo talk contribs deleted page 666 Problem Set 4 (Delete old solutions before start of new term!)
- 01:05, 5 September 2012 Goncalo talk contribs deleted page 666 Problem Set 3 (Delete old solutions before start of new term!)
- 01:04, 5 September 2012 Goncalo talk contribs deleted page 666 Problem Set 2 (Delete old solutions before start of new term!)
- 01:04, 5 September 2012 Goncalo talk contribs deleted page 666 Problem Set 1 (Delete old solutions before start of new term!)
- 15:55, 1 June 2012 User account Michael talk contribs was created by Goncalo talk contribs
- 15:49, 1 June 2012 Goncalo talk contribs deleted page Qplot.0.01 (content was: ' download qplot.0.01.tar.gz' (and the only contributor was 'Bingshan'))
- 15:43, 1 June 2012 Goncalo talk contribs deleted page Inbreeding Coefficient (content was: 'Inbreeding Coefficient Estimates from Genotype Likelihoods' (and the only contributor was 'Atks'))
- 04:49, 7 December 2011 Goncalo talk contribs uploaded File:666.24.pdf (Introduction to likelihood calculations in large pedigrees and the Elston Stewart algorithm.)
- 04:20, 7 December 2011 Goncalo talk contribs uploaded a new version of File:666.2011.01.pdf (Corrected small typos.)
- 04:19, 7 December 2011 Goncalo talk contribs uploaded a new version of File:666.2011.02.pdf (Corrected small typos.)
- 09:13, 5 December 2011 Goncalo talk contribs uploaded File:666.2011.02.pdf (Copy Number Variation Analysis Using Sequence Data)
- 07:43, 30 November 2011 Goncalo talk contribs uploaded File:666.2011.01.pdf (Introduction to Rare Variant Burden Tests and Related Issues. )
- 05:59, 28 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.05.pdf (Added Sardinia example and discussion of consensus genotype calling.)
- 04:25, 28 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.03.pdf (Fixes several small typos in worked imputation examples.)
- 07:49, 23 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.04.pdf (Updates to introduce base quality, mapping quality and base alignment quality.)
- 06:55, 21 November 2011 Goncalo talk contribs uploaded a new version of File:666.17.pdf (Minor updates to figures.)
- 06:54, 21 November 2011 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Minor updates to figures.)
- 06:54, 21 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.03.pdf (Minor cosmetic updates.)
- 07:17, 16 November 2011 Goncalo talk contribs deleted page File:666.20.pdf (Deleted old revision 20111116111732!666.20.pdf: duplicate)
- 07:17, 16 November 2011 Goncalo talk contribs uploaded a new version of File:666.20.pdf (This version removes page numbers (a visual nuisance) and adds a mention of approaches that use empirical, rather than pedigree based, kinship coefficients.)
- 07:15, 16 November 2011 Goncalo talk contribs uploaded a new version of File:666.20.pdf
- 08:01, 9 November 2011 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Fixed typos, added example of age-related macular degeneration linkage study.)
- 05:12, 7 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.02.pdf (Simplified lecture to make it fit more easily into one hour.)
- 16:40, 31 October 2011 Goncalo talk contribs uploaded File:Pval-qq-sample.png (Sample QQ Plot)
- 10:09, 28 October 2011 User account Clement Ma talk contribs was created by Goncalo talk contribs
- 09:44, 28 October 2011 Goncalo talk contribs restored page 666 Problem Set 3 (8 revisions restored)
- 09:43, 28 October 2011 Goncalo talk contribs restored page 666 Problem Set 2 (39 revisions restored)
- 02:22, 24 October 2011 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Added ACE gene example)
- 09:41, 10 October 2011 Goncalo talk contribs uploaded File:2011.09 - Exome Chip.pdf (Summary of exome chip design process and content.)
- 17:08, 7 October 2011 Goncalo talk contribs restored page 666 Problem Set 1 (67 revisions restored)
- 06:05, 3 October 2011 Goncalo talk contribs uploaded a new version of File:666.06.pdf (Minor updates to the lecture, including: * Explicit formulae for Tajima's D (very complicated!) * More extended discussion of the impact of population size on the coalescent)
- 08:35, 28 September 2011 Goncalo talk contribs uploaded a new version of File:666.04.pdf (Minor typo corrections.)
- 08:34, 28 September 2011 Goncalo talk contribs uploaded a new version of File:666.05.pdf (Added frequency spectrum from 12,000 individuals.)
- 02:29, 21 September 2011 Goncalo talk contribs deleted page Basic instructions (content was: 'This site is powered by MediaWiki. Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.<br><br> =…' (and the only contributor was 'Goncalo'))
- 02:25, 21 September 2011 Goncalo talk contribs deleted page Math Test (content was: '<math>\alpha^2+\beta^2=1</math>' (and the only contributor was 'Dharknes'))
- 04:12, 19 September 2011 Goncalo talk contribs uploaded a new version of File:666.03.pdf (Minor updates to the lecture - added recommended reading list, synchronized content with 2011 lecture series)
- 07:26, 12 September 2011 Goncalo talk contribs uploaded File:2011.666.01.pdf (Course Introduction and Hardy Weinberg Lecture Combined into A Single Class)
- 05:48, 12 September 2011 Goncalo talk contribs deleted page 666 Problem Set 6 (Problem Set Obsolete)
- 05:47, 12 September 2011 Goncalo talk contribs deleted page 666 Problem Set 5 (Problem Set Obsolete)
- 05:47, 12 September 2011 Goncalo talk contribs deleted page 666 Problem Set 4 (Problem Set Obsolete)
- 05:46, 12 September 2011 Goncalo talk contribs deleted page 666 Problem Set 3 (Problem Set Obsolete)
- 05:46, 12 September 2011 Goncalo talk contribs deleted page 666 Problem Set 2 (Problem Set Obsolete)
- 05:45, 12 September 2011 Goncalo talk contribs deleted page 666 Problem Set 1 (Problem Set Obsolete)
- 03:02, 28 July 2011 Goncalo talk contribs moved page 1000G Cookbook to Minimac: 1000 Genomes Imputation Cookbook (Switched to more informative title)
- 07:48, 10 June 2011 User account Feng Zhang talk contribs was created by Goncalo talk contribs
- 21:02, 2 December 2010 Goncalo talk contribs uploaded File:666.Zollner.CNV.pdf (Guest lecture by Sebastian Zollner on Copy Number Variation.)
- 10:42, 2 December 2010 Goncalo talk contribs blocked Maivang2811 talk contribs with an expiration time of indefinite (account creation disabled, email disabled) (Spamming links to external sites)
- 10:42, 2 December 2010 Goncalo talk contribs deleted page User:Maivang2811 (Vandalism: content was: '[http://www.johnconnorsmd.com/ atlanta plastic surgery] [http://www.johnconnorsmd.com/ Atlanta Plastic surgeons]' (and the only contributor was 'Maivang2811'))
- 23:39, 1 December 2010 Goncalo talk contribs uploaded File:666.2010.05.pdf
- 16:08, 29 November 2010 Goncalo talk contribs blocked Xukaxuka2811 talk contribs with an expiration time of indefinite (account creation disabled, email disabled) (Spamming links to external sites)
- 16:07, 29 November 2010 Goncalo talk contribs deleted page User:Xukaxuka2811 (spam)
- 15:55, 29 November 2010 Goncalo talk contribs uploaded File:666.2010.04.pdf (Basic introduction to some of the issues and opportunities posed by whole genome sequence studies.)
- 19:10, 24 November 2010 Goncalo talk contribs uploaded a new version of File:666.2010.03.pdf
- 07:21, 23 November 2010 Goncalo talk contribs moved page Examples to Examples of Read Mapping with Karma and BWA
- 07:21, 23 November 2010 Goncalo talk contribs moved page Talk:Examples to Talk:Examples of Read Mapping with Karma and BWA
- 07:14, 23 November 2010 Goncalo talk contribs uploaded File:666.2010.03.pdf (Introduction to Genotype Imputation, describes imputation in families and later in samples of unrelated individuals.)
- 13:32, 18 November 2010 Goncalo talk contribs changed group membership for Mktrost from (none) to administrator
- 13:32, 18 November 2010 Goncalo talk contribs changed group membership for Mflick from administrator to administrator and bureaucrat
- 13:32, 18 November 2010 Goncalo talk contribs changed group membership for Pha from (none) to administrator and bureaucrat
- 03:47, 18 November 2010 Goncalo talk contribs uploaded a new version of File:666.17.pdf (Minor refinements to axis.)
- 08:59, 16 November 2010 Goncalo talk contribs uploaded a new version of File:666.2010.02.pdf (Fixes minor errors.)
- 08:59, 16 November 2010 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Updated version of lecture with more detailed review of ASP analysis)
- 02:59, 11 November 2010 Goncalo talk contribs uploaded File:666.2010.02.pdf (Lecture describing Risch's MLS and Holman's Possible Triangle. )
- 11:07, 9 November 2010 Goncalo talk contribs uploaded a new version of File:666.2010.01.pdf (Lecture on power calculation for genomewide association studies. Also introduces the idea of two stage genomewide association studies. ** Lots of typos fixed in this version **)
- 06:19, 9 November 2010 Goncalo talk contribs uploaded File:666.2010.01.pdf
- 08:10, 6 November 2010 Goncalo talk contribs deleted page User talk:Abnehmen (spam)
- 08:10, 6 November 2010 Goncalo talk contribs blocked Abnehmen talk contribs with an expiration time of indefinite (account creation disabled, email disabled) (Spamming links to external sites)
- 10:23, 28 October 2010 Goncalo talk contribs uploaded a new version of File:666.20.pdf (Fixed a small typo. Compared to original version, this one also includes slightly more informative titles.)
- 08:14, 28 October 2010 Goncalo talk contribs uploaded a new version of File:666.20.pdf (Minor update to include kinship coefficients.)
- 04:27, 26 October 2010 Goncalo talk contribs uploaded a new version of File:666.13.pdf (Added a summary slide at the beginning. )
- 04:18, 26 October 2010 Goncalo talk contribs uploaded a new version of File:666.13.pdf (Updated lecture to include QQ plots, brief mention of principal component analysis.)
- 11:38, 15 October 2010 Goncalo talk contribs restored page 666 Problem Set 4 (58 revisions restored)
- 11:38, 15 October 2010 Goncalo talk contribs restored page 666 Problem Set 3 (8 revisions restored)
- 19:01, 12 October 2010 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Typo fixes.)
- 07:58, 12 October 2010 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Minor update.)
- 05:00, 12 October 2010 Goncalo talk contribs deleted page Mach2dat: analyze case-control data with MACH output (content before blanking was: '== Association with MACH output == After you have performed the imputation, you can directly use MACH output to assess association for quantitative and qualitative traits in unrelated. You will need a *.ped and *.dat f…')
- 03:53, 7 October 2010 Goncalo talk contribs uploaded a new version of File:666.11.pdf (Minor typos fixed.)
- 03:53, 7 October 2010 Goncalo talk contribs deleted page File:666.10 - E-M algorithm.ppt
- 03:53, 7 October 2010 Goncalo talk contribs uploaded File:666.10 - E-M algorithm.ppt
- 01:55, 7 October 2010 Goncalo talk contribs deleted page Zeroo (content was: 'link=http://www.bonaveri.ru|bonaveri link=http://www.fivetv.ru|fivetv File:Vik.jpg|link=http://www.hvacguru.ru|hvacgur…' (and the only contributor was 'Bololoikak2'))
- 01:53, 7 October 2010 Goncalo talk contribs blocked Bololoikak2 talk contribs with an expiration time of indefinite (account creation disabled, email disabled) (Inserting nonsense/gibberish into pages)
- 01:51, 5 October 2010 Goncalo talk contribs uploaded a new version of File:666.09.pdf (Fixes several typos.)
- 01:51, 5 October 2010 Goncalo talk contribs uploaded a new version of File:666.09.Master.pdf (Minor clarification of different uses of N.)
- 10:14, 4 October 2010 Goncalo talk contribs deleted page File:Zepp21.jpg (Copyright violation)
- 10:14, 4 October 2010 Goncalo talk contribs blocked Remator3 talk contribs with an expiration time of indefinite (account creation disabled, email disabled) (Inserting nonsense/gibberish into pages)
- 09:56, 4 October 2010 Goncalo talk contribs restored page 666 Problem Set 2 (35 revisions restored)
- 08:28, 30 September 2010 Goncalo talk contribs uploaded File:666.09.Master.pdf (Lecturer's slides for lecture on allele frequency estimation. Include solutions to in class exercises.)
- 08:44, 28 September 2010 Goncalo talk contribs uploaded a new version of File:666.06.pdf
- 13:34, 27 September 2010 Goncalo talk contribs blocked Mertcenk11 talk contribs with an expiration time of indefinite (account creation disabled, email disabled) (Spamming links to external sites)
- 01:50, 21 September 2010 Goncalo talk contribs uploaded a new version of File:666.04.pdf (Minor typos fixed.)
- 23:33, 15 September 2010 Goncalo talk contribs uploaded a new version of File:666.04.pdf (Introductory lecture on the coalescent. This version fixes some minor typos.)
- 02:25, 14 September 2010 Goncalo talk contribs uploaded a new version of File:666.03.pdf
- 02:24, 14 September 2010 Goncalo talk contribs uploaded a new version of File:666.02.pdf
- 15:09, 13 September 2010 Goncalo talk contribs changed group membership for Sannas from (none) to administrator
- 23:22, 8 September 2010 Goncalo talk contribs deleted page GSK overview (Deleted empty page)
- 22:34, 8 September 2010 Goncalo talk contribs uploaded a new version of File:666.02.pdf
- 05:46, 7 September 2010 Goncalo talk contribs uploaded a new version of File:666.01.pdf (Biostatistics 666 Introductory Lecture as of 2010/09/07)
- 13:40, 8 August 2010 Goncalo talk contribs deleted page File:EmmaWatson23.JPG (Spam)
- 13:39, 8 August 2010 Goncalo talk contribs blocked EmmaWatson23 talk contribs with an expiration time of indefinite (account creation disabled, email disabled) (Spamming links to external sites)
- 13:38, 8 August 2010 Goncalo talk contribs deleted page User:EmmaWatson23 (Vandalism: content was: 'left Lorem ipsum dolor sit amet, consectetur adipiscing elit. Suspendisse ornare urna quis lectus ultrices auctor. Maecenas fe…' (and the only contributor was '[[Special:Contributions/EmmaWatson23|E)
- 09:10, 22 July 2010 Goncalo talk contribs uploaded File:QQ-plot-problem.png (QQ plot for a problematic study; from McCarthy et al (2008).)
- 09:09, 22 July 2010 Goncalo talk contribs uploaded File:QQ-plot-ideal.png (QQ plot for an ideal study; from McCarthy et al (2008).)
- 09:09, 22 July 2010 Goncalo talk contribs uploaded File:QQ-plot-null.png (QQ plot for a null study; from McCarthy et al (2008).)
- 17:28, 20 July 2010 Goncalo talk contribs deleted page 666 Problem Set 7 (Private.)
- 17:28, 20 July 2010 Goncalo talk contribs deleted page 666 Problem Set 6 (Private.)
- 17:28, 20 July 2010 Goncalo talk contribs deleted page 666 Problem Set 5 (Private.)
- 17:28, 20 July 2010 Goncalo talk contribs deleted page 666 Problem Set 4 (Private.)
- 17:28, 20 July 2010 Goncalo talk contribs deleted page 666 Problem Set 3 (Private.)
- 17:27, 20 July 2010 Goncalo talk contribs deleted page 666 Problem Set 2 (Private)
- 17:26, 20 July 2010 Goncalo talk contribs deleted page 666 Problem Set 1 (Private)
- 12:36, 9 June 2010 Goncalo talk contribs moved page Mach to MaCH
- 13:28, 2 June 2010 Goncalo talk contribs moved page C++ Executable: bam to Bam (End users won't care that it is a c++ executable.)
- 13:26, 2 June 2010 Goncalo talk contribs deleted page FastQValidator (Deleted to make way for move)
- 13:26, 2 June 2010 Goncalo talk contribs moved page C++ Executable: fastQValidator to FastQValidator (end users won't care whether this is a C++ or Pascal executable)
- 13:26, 2 June 2010 Goncalo talk contribs moved page Talk:C++ Executable: fastQValidator to Talk:FastQValidator (end users won't care whether this is a C++ or Pascal executable)
- 00:48, 1 June 2010 Goncalo talk contribs deleted page SAM Format (Functionally equivalent to SAM page.)
- 00:47, 1 June 2010 Goncalo talk contribs moved page BAM Format to BAM
- 10:33, 26 May 2010 Goncalo talk contribs deleted page AnnoVcf (content before blanking was: '#REDIRECT VcfCodingSnps')
- 10:33, 26 May 2010 Goncalo talk contribs deleted page User talk:Liyanmin (content before blanking was: '#REDIRECT AnnoVcf')
- 22:11, 18 May 2010 Goncalo talk contribs moved page ExomePicks Program to ExomePicks (Make naming consistent with that of other software utilities)
- 08:57, 17 May 2010 Goncalo talk contribs moved page LocusZoom Documentation to LocusZoom over redirect
- 08:56, 17 May 2010 Goncalo talk contribs moved page METAL Program to METAL
- 01:42, 8 May 2010 Goncalo talk contribs blocked AssaCom talk contribs with an expiration time of indefinite (account creation disabled) (Inserting nonsense/gibberish into pages)
- 01:41, 8 May 2010 Goncalo talk contribs deleted page User:AssaCom (content was: '<p align=justify> «Аль-Каида Аравийского Полуострова» распространила утверждение, в котором пр…' (and the only contributor was 'AssaCom'))
- 10:06, 20 April 2010 Goncalo talk contribs uploaded a new version of File:666.21.pdf
- 08:38, 20 April 2010 Goncalo talk contribs uploaded File:666.21.pdf
- 00:09, 14 April 2010 Goncalo talk contribs uploaded File:LocusZoomSmall.png
- 00:54, 8 April 2010 Goncalo talk contribs uploaded a new version of File:666.19.pdf
- 00:54, 8 April 2010 Goncalo talk contribs uploaded File:666.20.pdf
- 03:55, 6 April 2010 Goncalo talk contribs uploaded a new version of File:666.19.pdf
- 02:43, 6 April 2010 Goncalo talk contribs uploaded File:666.19.pdf (Non-parametric linkage analysis, parametric linkage analysis, information content calculations.)
- 00:50, 1 April 2010 Goncalo talk contribs uploaded File:666.18.pdf (Introduces the Lander-Green algorithm.)
- 00:35, 1 April 2010 Goncalo talk contribs uploaded a new version of File:666.17.pdf
- 06:08, 30 March 2010 Goncalo talk contribs moved page Metal Documentation to METAL Documentation
- 05:56, 30 March 2010 Goncalo talk contribs uploaded File:666.17.pdf (Describes approaches for multipoint analysis in different relative pairs. Describes approaches for checking genetic relationships. )
- 02:26, 25 March 2010 Goncalo talk contribs moved page Metal Command Reference to METAL Command Reference
- 19:39, 23 March 2010 Goncalo talk contribs deleted page MathMLTest (content was: 'testing mathml <math>x = \frac{-b \pm \sqrt{b^2 - 4ac}}{2a}</math> <math>\sqrt{2}</math> {{math|<VAR>α</VAR>}}')
- 19:32, 23 March 2010 Goncalo talk contribs deleted page Derek Test (content was: 'File:Test.tgz' (and the only contributor was 'Dharknes'))
- 07:09, 23 March 2010 Goncalo talk contribs uploaded File:666.16.pdf (Introduces multipoint analysis, in the context of sibling pairs.)
- 07:09, 23 March 2010 Goncalo talk contribs uploaded File:666.15.pdf (Shows how a simple disease model can be used to predict IBD probabilities for relative pairs. Introduces possible triangle constraint.)
- 07:17, 18 March 2010 Goncalo talk contribs moved page MapabilityScores to MappabilityScores
- 07:17, 18 March 2010 Goncalo talk contribs uploaded File:666.14.pdf
- 02:56, 22 February 2010 Goncalo talk contribs uploaded File:666.13.pdf (Introduces the problem of population stratification in the context of an association study. Discusses three possible solutions: a) Family based association tests. b) The genomic control method. c) Genotype based matching approaches. )
- 08:15, 18 February 2010 Goncalo talk contribs uploaded File:666.12.pdf (Introduces Haplotype Association Tests.)
- 22:59, 15 February 2010 Goncalo talk contribs uploaded a new version of File:666.10.pdf (Introduction to E-M Algorithm in Genetics. This version fixes reference to Excoffier and Slatkin paper. )
- 22:58, 15 February 2010 Goncalo talk contribs uploaded a new version of File:666.09.pdf (Fixed reference to Excoffier paper.)
- 22:53, 15 February 2010 Goncalo talk contribs uploaded File:666.11.pdf (Haplotyping Algorithms. February 16, 2010)
- 09:46, 11 February 2010 Goncalo talk contribs uploaded File:666.10.pdf
- 01:17, 11 February 2010 Goncalo talk contribs uploaded File:666.08.pdf (Advanced guest lecture by Sebastian Zoellner. Focused on computation methods related to the coalescent. February 4, 2010.)
- 01:16, 11 February 2010 Goncalo talk contribs uploaded File:666.07.pdf (Advanced lecture on the coalescent by guest lecturer, Sebastian Zoellner. Focused on coalescent modeling with changing population sizes. February 2, 2009.)
- 12:01, 9 February 2010 Goncalo talk contribs uploaded a new version of File:666.09.pdf (Fixed minor typos. February 9, 2010)
- 04:49, 9 February 2010 Goncalo talk contribs uploaded File:666.09.pdf (This lecture reviews maximum likelihood estimation and applies maximum likelihood concepts to derive estimates of allele frequency in several simple settings. Last update February 9, 2010.)
- 04:23, 28 January 2010 Goncalo talk contribs uploaded File:666.06.pdf (Coalescent with Recombination or Migration January 26, 2010)
- 02:15, 26 January 2010 Goncalo talk contribs uploaded File:666.05.pdf (This lecture covers three concepts: * Estimating theta using sequence data as input. * Modeling frequency spectra using simulations * Analytically modeling the distribution of total variant count January 26, 2010)
- 09:37, 21 January 2010 Goncalo talk contribs uploaded File:666.04.pdf (Introduction to the Coalescent. January 21, 2010)
- 04:23, 19 January 2010 Goncalo talk contribs uploaded a new version of File:666.03.pdf (Introduction to Linkage Disequilibrium. Further tweaks as of January 19, 2010. The lecture is presently too long and should be split into two.)
- 03:13, 19 January 2010 Goncalo talk contribs uploaded a new version of File:666.03.pdf (Updated Lecture Notes, as of January 19, 2010.)
- 08:44, 14 January 2010 Goncalo talk contribs uploaded File:666.03.pdf (Introduces Measures of Linkage Disequibrium and Related Concepts Last updated January 14, 2010)
- 10:52, 13 January 2010 Goncalo talk contribs moved page FastQ validator to FastQ Validator
- 02:43, 12 January 2010 Goncalo talk contribs uploaded File:666.02.pdf (Lecture on Hardy Weinberg Equilibrium January 12, 2009)
- 00:26, 7 January 2010 Goncalo talk contribs uploaded File:666.01.pdf (Biostatistics 666 Introductory Lecture as of 2010/01/06.)
- 11:29, 24 November 2009 Goncalo talk contribs moved page Lanecheck to BamIdentityCheck (renamed lane check to bamIdentityCheck which is more descriptive)
- 17:17, 19 November 2009 Goncalo talk contribs moved page AnnoVcf to VcfCodingSnps (Better name)
- 01:32, 14 November 2009 Goncalo talk contribs uploaded File:2009.08 Group Retreat Photo.jpg (Photo from Group Retreat in August 2008.)
- 11:51, 10 November 2009 User account Goncalo talk contribs was created