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, 08:02, 22 May 2014
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− | | 57 variants from GATK's normalization were left aligned by vt. 6 were biallelic and 51 were multiallelic. Note that 2 variants were changed by GATK but were not completely normalized. | + | | GATK's algorithm is said explicitly to work only for biallelic simple indels. The 57 variants were either multiallelic or mixed variants (SNP adjacent to indel). |
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| | #normalized after vt | | | #normalized after vt |