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, 09:43, 17 June 2014
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| ;What is HG00551's genotype at these positions? | | ;What is HG00551's genotype at these positions? |
| #First check which sample number HG00551 is: | | #First check which sample number HG00551 is: |
− | zcat ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz |grep "#CHROM" | + | $GC/bin/tabix -H ${OUT}/thunder/chr22/ALL/thunder/chr22.filtered.PASS.beagled.ALL.thunder.vcf.gz |
| * That will help you figure out it's genotype. | | * That will help you figure out it's genotype. |
| * Rerun the tabix command and scroll to find HG00551's genotype: | | * Rerun the tabix command and scroll to find HG00551's genotype: |