From Genome Analysis Wiki
Jump to navigationJump to search
23 bytes added
, 21:54, 19 November 2009
mLine 77: |
Line 77: |
| == Auxiliary tools == | | == Auxiliary tools == |
| | | |
− | ABI SOLiD platform generated FASTA file (e.g. XXX.csfasta) and quality file (e.g. XXX\_QV.qual) separately. We wrote a script, ''solid2csfastq.py'', to convert it to color space FASTQ file(e.g. XXX.csfastq). We believe a single color space FASTQ file will simplify post processing.<br>
| + | The ABI SOLiD platform generates separate FASTA files (e.g. XXX.csfasta) and quality files (e.g. XXX\_QV.qual). We provide a script, ''solid2csfastq.py'', to convert these into a single color space FASTQ file (e.g. XXX.csfastq). We believe a single color space FASTQ file simplifies post processing.<br> |
| | | |
| == Choose an appropriate size for word index == | | == Choose an appropriate size for word index == |