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182 bytes removed
, 23:13, 23 November 2014
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| Did you see a variant at the position? | | Did you see a variant at the position? |
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− | ${GC}/bin/tabix ${OUT}/vcfs/chr22/chr22.filtered.vcf.gz 22:36661906 | head -1
| + | 22 36661906 . A G 23 PASS DP=409;MQ=59;NS=62;AN=124;AC=2;AF=0.013847; |
− | 22 36661906 . A G 18 PASS DP=409;MQ=59;NS=62;AN=124;AC=2;AF=0.013827;AB=0.4065;AZ=-0.5287; | + | AB=0.4169;AZ=-0.3525;FIC=-0.0089;SLRT=-0.0071;LBS=36,36,0,0,1,1,0,0;OBS=145,191,0,0,3,2,0,0;STR=-0.040; |
− | FIC=-0.0092;SLRT=-0.0075;HWEAF=0.0138;HWDAF=0.0276,0.0000;LBS=36,36,0,0,1,1,0,0;
| + | STZ=-0.740;CBR=0.008;CBZ=0.144;IOR=0.000;IOZ=-1.370;AOI=-5.614;AOZ=-4.243;LQR=0.178;MQ0=0.000; |
− | OBS=145,191,0,0,3,2,0,0;STR=-0.040;STZ=-0.740;CBR=0.008;CBZ=0.144;IOR=0.000;IOZ=-1.370;
| + | MQ10=0.000;MQ20=0.000;MQ30=0.000;SVM=1.45191 GT:DP:GQ:PL 0/0:4:28:0,12,65 |
− | AOI=-5.614;AOZ=-4.243;LQR=0.178;MQ0=0.000;MQ10=0.000;MQ20=0.000;MQ30=0.000;SVM=1.51214
| + | |
− | GT:DP:GQ:PL 0/0:4:28:0,12,65
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| | | |
| Let's check the sequence data to confirm that the variant really exists | | Let's check the sequence data to confirm that the variant really exists |
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| View Screenshot | | View Screenshot |
| <div class="mw-collapsible-content"> | | <div class="mw-collapsible-content"> |
− | [[File:Samtoolstviewsnp.png|600px]] | + | [[File:SamtoolstviewsnpNew.png|600px]] |
| </div> | | </div> |
| </div> | | </div> |