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, 02:02, 9 December 2014
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| 8 Central/South Asian populations in the HGDP dataset, including 195 individuals after excluding 5 outliers (defined as more than 5 standard deviations from mean in any of top 10 PCs, 1 removal iteration). Note that 7 out of these 8 population were collected in Pakistan and 1 was collected in China (Uygur). | | 8 Central/South Asian populations in the HGDP dataset, including 195 individuals after excluding 5 outliers (defined as more than 5 standard deviations from mean in any of top 10 PCs, 1 removal iteration). Note that 7 out of these 8 population were collected in Pakistan and 1 was collected in China (Uygur). |
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| + | [[File:HGDP Popualtions.png|thumb|center|alt=HGDP populations |600px|HGDP populations]] |
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| === Step 1: bam --> pileup === | | === Step 1: bam --> pileup === |