Line 129: |
Line 129: |
| <li>View Results</li> | | <li>View Results</li> |
| <div class="mw-collapsible-content" style="width:800px"> | | <div class="mw-collapsible-content" style="width:800px"> |
− | [[File:RefDir.png|500px]]
| + | 1000G_omni2.5.b37.sites.PASS.chr22.vcf.gz |
− | </div>
| + | 1000G_omni2.5.b37.sites.PASS.chr22.vcf.gz.tbi |
− | </div>
| + | 1000G.snps_indels.22.sites.bcf |
− | </ul>
| + | 1000G.snps_indels.22.sites.bcf.csi |
− | | + | 1kg.omni.chr22.36Mb.vcf.gz |
− | | + | 1kg.pilot_release.merged.indels.sites.hg19.chr22.vcf |
− | Additional Reference files required just for Structural Variation:
| + | dbsnp.13147541variants.22.sites.bcf |
− | ls ${SS}/svtoolkit/ref
| + | dbsnp.13147541variants.22.sites.bcf.csi |
− | <ul>
| + | dbsnp_135.b37.chr22.vcf.gz |
− | <div class="mw-collapsible mw-collapsed" style="width:200px">
| + | dbsnp_135.b37.chr22.vcf.gz.tbi |
− | <li>View Results</li>
| + | dbsnp.bcf.vcf |
− | <div class="mw-collapsible-content" style="width:800px">
| + | dbsnp.vcf.gz.vcf |
− | 1000G_omni2.5.b37.sites.PASS.chr22.vcf.gz dbsnp.13147541variants.22.sites.bcf gencode.cds.22.bed.gz | + | gencode.cds.22.bed.gz |
− | human.g1k.v37.chr22.fa.amb human_g1k_v37.chr22.mask.100.fasta mills.208620indels.22.sites.bcf | + | hapmap_3.3.b37.sites.chr22.vcf.gz |
− | 1000G_omni2.5.b37.sites.PASS.chr22.vcf.gz.tbi dbsnp.13147541variants.22.sites.bcf.csi hapmap_3.3.b37.sites.chr22.vcf.gz | + | hapmap_3.3.b37.sites.chr22.vcf.gz.tbi |
− | human.g1k.v37.chr22.fa.ann human_g1k_v37.chr22.mask.100.fasta.fai mills.208620indels.22.sites.bcf.csi | + | human.g1k.v37.chr22-bs.umfa |
− | 1000G.snps_indels.22.sites.bcf dbsnp_135.b37.chr22.vcf.gz hapmap_3.3.b37.sites.chr22.vcf.gz.tbi | + | human.g1k.v37.chr22.dict |
− | human.g1k.v37.chr22.fa.bwt human.g1k.v37.chr22.winsize100.gc mills_indels_hg19.22.sites.bcf | + | human.g1k.v37.chr22.fa |
− | 1000G.snps_indels.22.sites.bcf.csi dbsnp_135.b37.chr22.vcf.gz.tbi human.g1k.v37.chr22-bs.umfa | + | human.g1k.v37.chr22.fa.amb |
− | human.g1k.v37.chr22.fa.fai humgen_g1k_v37_ploidy.chr22.map 1kg.omni.chr22.36Mb.vcf.gz | + | human.g1k.v37.chr22.fa.ann |
− | dbsnp.bcf.vcf human.g1k.v37.chr22.dict human.g1k.v37.chr22.fa.pac | + | human.g1k.v37.chr22.fa.bwt |
− | indel.reference.txt 1kg.pilot_release.merged.indels.sites.hg19.chr22.vcf dbsnp.vcf.gz.vcf | + | human.g1k.v37.chr22.fa.fai |
− | human.g1k.v37.chr22.fa human.g1k.v37.chr22.fa.sa mdust.22.bed.gz | + | human.g1k.v37.chr22.fa.pac |
| + | human.g1k.v37.chr22.fa.sa |
| + | human_g1k_v37.chr22.mask.100.fasta |
| + | human_g1k_v37.chr22.mask.100.fasta.fai |
| + | human.g1k.v37.chr22.winsize100.gc |
| + | humgen_g1k_v37_ploidy.chr22.map |
| + | indel.reference.txt |
| + | mdust.22.bed.gz |
| + | mills.208620indels.22.sites.bcf |
| + | mills.208620indels.22.sites.bcf.csi |
| + | mills_indels_hg19.22.sites.bcf |
| </div> | | </div> |
| </div> | | </div> |