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196 bytes removed
, 16:46, 9 December 2014
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| Check out the GenomeStrip specific settings at the end of the configuration file | | Check out the GenomeStrip specific settings at the end of the configuration file |
− | tail -n 8 ${SS}/gotcloud.conf | + | tail -n 5 ${SS}/gotcloud.conf |
| | | |
| <ul> | | <ul> |
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| ## GenomeSTRIP | | ## GenomeSTRIP |
| ############################# | | ############################# |
− | GENOMESTRIP_OUT = $(OUT_DIR)/sv
| + | GENOMESTRIP_MASK_FASTA = $(REF_DIR)/human_g1k_v37.chr22.mask.100.fasta |
− | GENOMESTRIP_SVTOOLKIT_DIR = svtoolkit
| + | GENOMESTRIP_PLOIDY_MAP = $(REF_DIR)/humgen_g1k_v37_ploidy.chr22.map |
− | GENOMESTRIP_MASK_FASTA = $(GENOMESTRIP_SVTOOLKIT_DIR)/ref/human_g1k_v37.chr22.mask.100.fasta | |
− | GENOMESTRIP_PLOIDY_MAP = $(GENOMESTRIP_SVTOOLKIT_DIR)/conf/humgen_g1k_v37_ploidy.chr22.map | |
− | GENOMESTRIP_PARAM = $(GENOMESTRIP_SVTOOLKIT_DIR)/conf/genstrip_parameters.txt
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| </div> | | </div> |
| </div> | | </div> |