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154 bytes added
, 10:31, 10 December 2014
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| In principle, the metadata can be created from the input BAM files by running the following command | | In principle, the metadata can be created from the input BAM files by running the following command |
− | perl ${GC}/bin/genomestrip.pl -run-metadata --conf ${SS}/gotcloud.conf --numjobs 2 --base-prefix ${SS} --outdir ${OUT} | + | computerc.args.list |
| + | cpt |
| + | depth |
| + | depth.args.list |
| + | depth.dat |
| + | gcprofile |
| + | gcprofiles.list |
| + | gcprofiles.zip |
| + | genome_sizes.txt |
| + | isd |
| + | isd.dist.args.list |
| + | isd.dist.bin |
| + | rccache |
| + | rccache.bin |
| + | rccache.bin.idx |
| + | rccache.list |
| + | rccache.merge |
| + | spans |
| + | spans.args.list |
| + | spans.dat |
| | | |
− | '''WAIT!!!!! DO NOT RUN THIS COMMAND, because it will take ~50 minutes to finish'''. | + | |
| + | '''WAIT!!!!! DO NOT RUN THIS COMMAND, because it will take >1 hour to finish'''. |
| | | |
| Instead, let's look what the output would have looked like. | | Instead, let's look what the output would have looked like. |