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264 bytes removed
, 12:47, 11 December 2014
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| * Setup an output directory | | * Setup an output directory |
| ** It will leave your output directory from the previous tutorial in tact. | | ** It will leave your output directory from the previous tutorial in tact. |
− | source /net/seqshop-server/home/hmkang/seqshop/setup.txt | + | source /net/seqshop-server/home/mktrost/seqshop/setup.txt |
| * You won't see any output after running <code>source</code> | | * You won't see any output after running <code>source</code> |
| ** It silently sets up your environment | | ** It silently sets up your environment |
| ** If you want to view the detail of the setup, type | | ** If you want to view the detail of the setup, type |
− | less /net/seqshop-server/home/hmkang/seqshop/setup.txt | + | less /net/seqshop-server/home/mktrost/seqshop/setup.txt |
| and press 'q' to finish. | | and press 'q' to finish. |
| | | |
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| View setup.txt | | View setup.txt |
| <div class="mw-collapsible-content" style="width:800px"> | | <div class="mw-collapsible-content" style="width:800px"> |
− | export GC=/net/seqshop-server/home/hmkang/seqshop/gotcloud | + | export GC=/net/seqshop-server/home/mktrost/seqshop/gotcloud |
− | export IN=/net/seqshop-server/home/hmkang/seqshop/inputs | + | export SS=/net/seqshop-server/home/mktrost/seqshop/example |
− | export REF=/net/seqshop-server/home/hmkang/seqshop/reference/chr22
| + | export EPACTS=/net/seqshop-server/home/mktrost/seqshop/epacts |
− | export VTREF=/net/seqshop-server/home/hmkang/seqshop/reference/vtRef
| |
− | export SV=/net/seqshop-server/home/hmkang/seqshop/reference/svtoolkit
| |
− | export EXT=/net/seqshop-server/home/hmkang/seqshop/external
| |
− | export EPACTS=/net/seqshop-server/home/hmkang/seqshop/epacts | |
| export OUT=~/out | | export OUT=~/out |
| mkdir -p ${OUT} | | mkdir -p ${OUT} |