From Genome Analysis Wiki
Jump to navigationJump to search
6 bytes added
, 15:28, 11 September 2015
Line 117: |
Line 117: |
| ==== Association Options==== | | ==== Association Options==== |
| * Currently, CMC type burden test, Madsen-Browning burden test, Variable Threshold burden test and SKAT are provided in '''RAREMETAL''', by specifying --burden, --MB, --VT and --SKAT. | | * Currently, CMC type burden test, Madsen-Browning burden test, Variable Threshold burden test and SKAT are provided in '''RAREMETAL''', by specifying --burden, --MB, --VT and --SKAT. |
− | * --maf specifies the minor allele frequency cutoff when doing gene-based or group-based burden tests. Variants with maf below this threshold will be ignored. The default is maf<0.05. | + | * --maf specifies the minor allele frequency cutoff when doing gene-based or group-based burden tests. Variants with maf '''above''' this threshold will be ignored. The default is maf<0.05. |
| | | |
| ==== Conditional Analysis==== | | ==== Conditional Analysis==== |