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816 bytes added
, 12:52, 14 March 2019
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| + | [[Category:RAREMETAL]] |
| + | [[Category:RAREMETALWORKER]] |
| ==Main Wiki Page== | | ==Main Wiki Page== |
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− | * The [[RAREMETAL_Change_Log | Change log]] | + | * [[RAREMETAL_Change_Log | RAREMETAL Change log]] |
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− | ===Incoming update=== | + | ==Reporting a bug== |
| + | Please report issues at our GitHub repository [https://github.com/statgen/raremetal/issues issue tracker]. When possible, include your platform (Ubuntu, CentOS, Mac OS, etc), as well as any relevant commands and output that can help us to identify the problem. |
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− | * Enable reading from .gz annotated vcf | + | ==Incoming update== |
− | * Add SKAT-O | + | * Add an option to store group file from vcf |
− | * Solve the numeric issue of lambda = 0 in SKAT | + | * Take snpeff as annotation input |
| + | * When no conditional variant is available, warning is generated but not written to log file. |
| + | * enable reading from .gz annotated vcf |
| + | * add SKAT-O |
| + | * solve the numeric issue of lambda = 0 in SKAT |
| + | * In conditional analysis, when cov matrix between the test variant and its conditioned variants is not invertible, MathSVD still tries to invert that matrix and that leads to weird conditional p values. |
| + | * '''Optimization for binary traits''' |
| + | * '''Memory optimization for gene-based test in large panel''' |