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149 bytes removed
, 17:10, 15 November 2016
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| ## KEY ELEMENTS TO CONFIGURE : NEED TO MODIFY | | ## KEY ELEMENTS TO CONFIGURE : NEED TO MODIFY |
| ############################################################################### | | ############################################################################### |
− | INDEX_SNP_FILE = /workingdirectory/example/example.index.snps.rsid.list.txt ## e.g. /workingdirectory/example/example.index.snps.rsid.list.txt | + | INDEX_SNP_FILE = /workingdirectory/example/example.index.snps.rsid.list.txt |
− | BED_FILE_INDEX = /workingdirectory/example/example.bed.file.index ## e.g. /workingdirectory/example/example.bed.file.index | + | BED_FILE_INDEX = /workingdirectory/example/example.bed.file.index |
− | REF_DIR = /workingdirectory/ref/ ## reference directory | + | REF_DIR = /workingdirectory/ref/ |
| R2THRESHOLD = 0.7 | | R2THRESHOLD = 0.7 |
| LDWINDOWSIZE = 1000000 | | LDWINDOWSIZE = 1000000 |