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, 10:49, 2 February 2017
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| | Class used for reading/validating a fastq file. | | | Class used for reading/validating a fastq file. |
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− | | <code>[http://www.sph.umich.edu/csg/mktrost/doxygen/current/classBaseCount.html BaseCount]</code> | + | | <code>[http://csg.sph.umich.edu//mktrost/doxygen/current/classBaseCount.html BaseCount]</code> |
| | Wrapper around an array that has one index per base and an extra index for a total count of all bases. This class is used to keep a count of the number of times each index has occurred. It can print a percentage of the occurrence of each base against the total number of bases. | | | Wrapper around an array that has one index per base and an extra index for a total count of all bases. This class is used to keep a count of the number of times each index has occurred. It can print a percentage of the occurrence of each base against the total number of bases. |
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− | | <code>[http://www.sph.umich.edu/csg/mktrost/doxygen/current/classBaseComposition.html BaseComposition]</code> | + | | <code>[http://csg.sph.umich.edu//mktrost/doxygen/current/classBaseComposition.html BaseComposition]</code> |
| | Class that tracks the composition of base by read location. | | | Class that tracks the composition of base by read location. |
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− | | <code>[http://www.sph.umich.edu/csg/mktrost/doxygen/current/classFastQStatus.html FastQStatus]</code> | + | | <code>[http://csg.sph.umich.edu//mktrost/doxygen/current/classFastQStatus.html FastQStatus]</code> |
| | Status for FastQ operations. | | | Status for FastQ operations. |
| |} | | |} |
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| == FASTQ Output == | | == FASTQ Output == |