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, 17:47, 11 July 2017
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| This command line would create three files : <code> OutPrefix.plink.dosage.gz, OutPrefix.fam, OutPrefix.map </code>. The <code>--format</code> parameter can take values 1, 2 and 3. Each of these values correspond to the three different formats available for PLINK dosage files (details on PLINK dosage files are given [http://www.cog-genomics.org/plink/1.9/assoc#dosage here]). Note that the generated <code>OutPrefix.map</code> does NOT contain any phenotype information (which needs to be manually edited before PLINK can run association testing). | | This command line would create three files : <code> OutPrefix.plink.dosage.gz, OutPrefix.fam, OutPrefix.map </code>. The <code>--format</code> parameter can take values 1, 2 and 3. Each of these values correspond to the three different formats available for PLINK dosage files (details on PLINK dosage files are given [http://www.cog-genomics.org/plink/1.9/assoc#dosage here]). Note that the generated <code>OutPrefix.map</code> does NOT contain any phenotype information (which needs to be manually edited before PLINK can run association testing). |
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| + | = Command Line Options = |
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| The command options for DosageConvertor are explained below. | | The command options for DosageConvertor are explained below. |