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, 18:16, 11 July 2017
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| == Converting Chromosome X Files == | | == Converting Chromosome X Files == |
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− | For the pseudo-autosomal region (PAR) on chromosome X, no extra parameter is necessary. For the non-PAR region, please ensure the following: | + | For a minimac3/4 output file containing the pseudo-autosomal region (PAR) on chromosome X, no extra parameter is necessary. For files containing the non-PAR region, please ensure the following: |
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| * If your input VCF dosage file has '''males as diploids''', then just add handle <code>--samePoidy</code>. This will NOT generate sex information in the output PLINK <code>.fam</code> file. | | * If your input VCF dosage file has '''males as diploids''', then just add handle <code>--samePoidy</code>. This will NOT generate sex information in the output PLINK <code>.fam</code> file. |