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== Auxiliary tools ==
== Auxiliary tools ==
The ABI SOLiD platform generates separate FASTA and quality files named XXX.csfasta and XXX\_QV.qual. We provide a script ''solid2csfastq.py'' which converts these into a single color space FASTQ file named XXX.csfastq. We believe that a single color space FASTQ file simplifies post processing.<br>
The ABI SOLiD platform generates separate FASTA and quality files named XXX.csfasta and XXX_QV.qual. We provide a script ''solid2csfastq.py'' which converts these into a single color space FASTQ file named XXX.csfastq. We believe that a single color space FASTQ file simplifies post processing.<br>
== Choose an appropriate size for word index ==
== Choose an appropriate size for word index ==
