From Genome Analysis Wiki
Jump to navigationJump to search
1,167 bytes added
, 15:28, 5 February 2010
Line 142: |
Line 142: |
| | | |
| == FastQ Validator Output == | | == FastQ Validator Output == |
− | '''Description Coming Soon'''
| + | When running the fastQValidator Executable, the output starts with a summary of the parameters: |
| + | The following parameters are in effect: |
| + | FastQ File Name : testFile.txt (-fname) |
| + | Min Read Length : 10 (-l9999) |
| + | Max Reported Errors : 100 (-e9999) |
| + | BaseType : BC (-bname) |
| + | TestMode : (-tname) |
| + | |
| + | Both the Executable and the Library outputs the following: |
| + | *Error messages for the first Configurable number of errors.: |
| + | ERROR on Line 25: The sequence identifier line was too short. |
| + | ERROR on Line 29: First line of a sequence does not begin wtih @ |
| + | ERROR on Line 33: No Sequence Identifier specified before the comment. |
| + | *Base Composition Percentages by Index: |
| + | |
| + | Base Composition Statistics: |
| + | Read Index %A %C %G %T %N Total Reads At Index |
| + | 0 100.00 0.00 0.00 0.00 0.00 20 |
| + | 1 5.00 95.00 0.00 0.00 0.00 20 |
| + | 2 5.00 0.00 5.00 90.00 0.00 20 |
| + | *Summary of the number of lines, sequences, and errors: |
| + | Finished processing testFile.txt with 92 lines containing 20 sequences. |
| + | There were a total of 17 errors. |