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, 16:50, 6 January 2014
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| = Overview of the <code>dumpHeader</code> function of <code>bamUtil</code> = | | = Overview of the <code>dumpHeader</code> function of <code>bamUtil</code> = |
| The <code>dumpHeader</code> option on the [[bamUtil]] executable prints the header of the specified SAM/BAM file to cout. | | The <code>dumpHeader</code> option on the [[bamUtil]] executable prints the header of the specified SAM/BAM file to cout. |
| + | |
| + | = Usage = |
| + | |
| + | ./bam dumpHeader <inputFile> |
| | | |
| = Parameters = | | = Parameters = |
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| filename : the sam/bam filename whose header should be printed. | | filename : the sam/bam filename whose header should be printed. |
| </pre> | | </pre> |
| + | <pre> |
| + | PhoneHome: |
| + | --noPhoneHome : disable PhoneHome (default enabled) |
| + | </pre> |
| + | |
| + | == Required Parameters == |
| + | {{InBAMInputFile|noParam=1st}} |
| | | |
− | = Usage = | + | == Phone Home Parameters == |
| + | See [[PhoneHome]] for more information on how PhoneHome works and what it does. |
| | | |
− | ./bam dumpHeader <inputFile>
| + | === Turn off PhoneHome (<code>--noPhoneHome</code>) === |
| + | Use the <code>--noPhoneHome</code> option to completely disable PhoneHome. PhoneHome is enabled by default based on the default thinning parameter. |
| | | |
| = Return Value = | | = Return Value = |