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, 22:06, 19 December 2011
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| Note that UMAKE requires external software packages to be copied to <code>$(UMAKE_HOME)/ext/</code> directory | | Note that UMAKE requires external software packages to be copied to <code>$(UMAKE_HOME)/ext/</code> directory |
− | * create a "ext" folder under UMAKE_HOME | + | * Create an "ext" folder under UMAKE_HOME |
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| * <code>bgzip</code> and <code>tabix</code> - To download, go to [http://sourceforge.net/projects/samtools/files/tabix/ TABIX Download] | | * <code>bgzip</code> and <code>tabix</code> - To download, go to [http://sourceforge.net/projects/samtools/files/tabix/ TABIX Download] |
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| * <code>beagle</code> - To download, go to [http://faculty.washington.edu/browning/beagle/beagle.html#download BEAGLE Download] | | * <code>beagle</code> - To download, go to [http://faculty.washington.edu/browning/beagle/beagle.html#download BEAGLE Download] |
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− | * Copy bgzip and tabix to /usr/cluster/bin/ or replace "/usr/cluster/bin" with the complete path of the above "ext" folder at line 652 and 654 of umake.pl under $(UMAKE_HOME)/scripts/ | + | * Copy <code>bgzip</code> and <code>tabix</code> to /usr/cluster/bin/ or replace "/usr/cluster/bin" with the complete path of the above "ext" folder at line 652 and 654 of umake.pl under $(UMAKE_HOME)/scripts/ |
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| == Basic Usage Example == | | == Basic Usage Example == |