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, 19:14, 27 August 2012
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| minimac --vcfReference --refHaps ref.vcf.gz --haps target.hap.gz --snps target.snps.gz --rounds 5 --states 200 --prefix results | | minimac --vcfReference --refHaps ref.vcf.gz --haps target.hap.gz --snps target.snps.gz --rounds 5 --states 200 --prefix results |
| Note: GWAS SNPs (file --snps target.snps.gz) are by default expected to be in the chr:pos format e.g. 1:1000 and on build37/hg19; | | Note: GWAS SNPs (file --snps target.snps.gz) are by default expected to be in the chr:pos format e.g. 1:1000 and on build37/hg19; |
− | otherwise, please set the --rs flag | + | otherwise, please set the --rs flag |
− | | |
| | | |
| ==== using a MaCH reference panel ==== | | ==== using a MaCH reference panel ==== |