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, 11:26, 5 October 2012
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| Uncompress EPACTS package to the directory you would like to install | | Uncompress EPACTS package to the directory you would like to install |
− | <pre> tar xzvf epacts_v2_12.noref_binary.2012_10_01.tar.gz</pre> | + | <pre> tar xzvf epacts_v2_12.noref_binary.2012_10_01.tar.gz</pre> |
− | <br>Download the reference FASTA files by running the following commands
| + | Download the reference FASTA files from 1000 Genomes FTP automatically by running the following commands<br> |
| <pre>cd epacts2.1/ | | <pre>cd epacts2.1/ |
− | ./ref_download.sh (Or copy the FASTA and index file locally you have to ${EPACTS_DIR}/ext/ref/) | + | ./ref_download.sh |
− | | + | (For advanced users, to save time for downloading the FASTA files (~900MB), you may copy a local copy of GRCh37 FASTA file and the index file to ${EPACTS_DIR}/ext/ref/) |
| </pre> | | </pre> |
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