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95 bytes added
, 09:48, 21 May 2013
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| == Install the Software == | | == Install the Software == |
| | | |
− | (1) There are a number of additional Debian packages that you may well need, so we make | + | '''(1)''' There are a number of additional Debian packages that you may well need, so we make |
| sure they are all installed. | | sure they are all installed. |
| | | |
| <code> | | <code> |
| + | sudo apt-get update |
| + | sudo apt-get upgrade # Apply maintenance |
| + | |
| sudo apt-get install java-common default-jre make libssl0.9.8 | | sudo apt-get install java-common default-jre make libssl0.9.8 |
| sudo apt-get install libnet-amazon-ec2-perl | | sudo apt-get install libnet-amazon-ec2-perl |
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| </code> | | </code> |
| | | |
− | (2) '''S3fs''' allows one to access S3 storage as a conventional file system. | + | '''(2)''' '''S3fs''' allows one to access S3 storage as a conventional file system. |
| This can be quite handy, but our recent experience is that accessing S3 data this | | This can be quite handy, but our recent experience is that accessing S3 data this |
| way (at least for 1000 Genomes data) is seldom really usable. | | way (at least for 1000 Genomes data) is seldom really usable. |
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| </code> | | </code> |
| | | |
− | (3) Follow the instructions to install a Debian package [[Pipeline Debian Package|debian package]] | + | '''(3)''' Follow the instructions to install a Debian package [[Pipeline Debian Package|debian package]] |
| Run the tests to be sure everything is OK. | | Run the tests to be sure everything is OK. |
| | | |