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451 bytes added
, 17:32, 3 January 2014
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| Left shift indels as far as they can go in the read. | | Left shift indels as far as they can go in the read. |
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| + | === Skip an Records with any of the Specified Flags (<code>--excludeFlags</code>) === |
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| + | Use <code>--excludeFlags</code> followed by the flags (as one integer) to skip any records that has any of the specified flags set. |
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| + | === Only Process Records with the all of the Specified Flags (<code>--requiredFlags</code>) === |
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| + | Use <code>--requiredFlags</code> followed by the flags (as one integer) to only process records with all of the specified flags set. |
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| {{paramsParameter|hdr====}} | | {{paramsParameter|hdr====}} |