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, 09:51, 29 January 2014
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| ==== using a VCF reference panel ==== | | ==== using a VCF reference panel ==== |
| minimac --vcfReference --refHaps ref.vcf.gz --haps target.hap.gz --snps target.snps.gz --rounds 5 --states 200 --prefix results | | minimac --vcfReference --refHaps ref.vcf.gz --haps target.hap.gz --snps target.snps.gz --rounds 5 --states 200 --prefix results |
− | Note: GWAS SNPs (file --snps target.snps.gz) are by default expected to be in the chr:pos format e.g. 1:1000 and on build37/hg19;
| + | |
− | otherwise, please set the --rs flag
| + | '''Note''': GWAS SNPs (file --snps target.snps.gz) are by default expected to be in the chr:pos format e.g. 1:1000 and on build37/hg19; otherwise, please set the --rs flag |
| | | |
| ==== using a MaCH reference panel ==== | | ==== using a MaCH reference panel ==== |