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- .../home/mktrost/gotcloudTutorialOut/alignment.recal/HG00096.recal.bam /home/mktrost/gotcloudTutorialOut/tmp/alignment.dedup/HG00096.dedup.bam .../home/mktrost/gotcloudTutorialOut/alignment.recal/HG00100.recal.bam /home/mktrost/gotcloudTutorialOut/tmp/alignment.dedup/HG00100.dedup.bam3 KB (299 words) - 10:03, 23 October 2014
- cp -r /home/mktrost/seqshop/inputs/2x/* ~/personal/. perl /home/mktrost/seqshop/inputs/checkIndex.pl ~/personal/align.2x.index11 KB (1,960 words) - 14:25, 13 November 2014
- PATH_TO_BASE = /home/mktrost/statgen1 KB (245 words) - 17:20, 28 March 2011
- /home/mktrost/bamUtil_1.0.10/bin/bam convert --in myInFile.sam --out myOutFile.bam2 KB (329 words) - 16:24, 6 January 2014
- source /net/seqshop-server/home/mktrost/seqshop/setupSS.txt cat /net/seqshop-server/home/mktrost/seqshop/setupSS.txt18 KB (2,806 words) - 12:16, 15 December 2014
- source /home/mktrost/seqshop/setup.2x.txt3 KB (464 words) - 14:32, 13 November 2014
- export GC=/home/mktrost/seqshop/gotcloud export REF=/home/mktrost/seqshop/reference/all10 KB (1,458 words) - 10:23, 2 February 2017
- SS_DIR = /net/seqshop-server/home/mktrost/seqshop/singleSample export EPACTS=/net/seqshop-server/home/mktrost/seqshop/epacts/13 KB (2,110 words) - 12:10, 22 May 2015
- export GC=/net/seqshop-server/home/mktrost/seqshop/gotcloud export REF=/net/seqshop-server/home/mktrost/seqshop/gotcloud/gotcloud.ref10 KB (1,511 words) - 10:24, 2 February 2017
- source /home/mktrost/seqshop/setup.2x.txt5 KB (775 words) - 14:30, 13 November 2014
- export SSREF=/net/seqshop-server/home/mktrost/seqshop/singleSample/ref5 KB (733 words) - 14:57, 21 May 2015
- source /net/seqshop-server/home/mktrost/seqshop/setup.txt less /net/seqshop-server/home/mktrost/seqshop/setup.txt21 KB (2,694 words) - 10:27, 2 February 2017
- source /net/seqshop-server/home/mktrost/seqshop/setupSS.txt5 KB (821 words) - 12:43, 12 December 2014
- source /net/seqshop-server/home/mktrost/seqshop/setup.txt less /net/seqshop-server/home/mktrost/seqshop/setup.txt19 KB (2,942 words) - 19:12, 30 March 2015
- source /net/seqshop-server/home/mktrost/seqshop/setup.txt less /net/seqshop-server/home/mktrost/seqshop/setup.txt21 KB (2,922 words) - 17:09, 17 December 2014
- source /net/seqshop-server/home/mktrost/seqshop/setup.txt cat /net/seqshop-server/home/mktrost/seqshop/setup.txt17 KB (2,608 words) - 16:35, 15 May 2015
- source /home/mktrost/seqshop/setup.txt less /home/mktrost/seqshop/setup.txt17 KB (2,452 words) - 14:37, 13 November 2014
- open and prefetch reference genome /home/mktrost/data/human.g1k.v37.fa: done.10 KB (1,546 words) - 14:07, 6 January 2014
- source /home/mktrost/seqshop/setup.txt less /home/mktrost/seqshop/setup.txt20 KB (2,959 words) - 14:37, 13 November 2014
- source /home/mktrost/seqshop/setup.txt less /home/mktrost/seqshop/setup.txt22 KB (3,052 words) - 14:36, 13 November 2014
- source /net/seqshop-server/home/mktrost/seqshop/setup.txt less /net/seqshop-server/home/mktrost/seqshop/setup.txt24 KB (3,267 words) - 17:09, 17 December 2014
- source /home/mktrost/seqshop/setup.txt wget http://csg.sph.umich.edu//mktrost/seqshopExample.tar.gz16 KB (2,571 words) - 11:07, 2 February 2017
- <pre>BAM_PREFIX = /net/seqshop-server/home/mktrost/seqshop/example</pre> </li>19 KB (2,813 words) - 18:35, 19 August 2015
- /net/seqshop-server/home/mktrost/seqshop/gotcloud/bin/genomestrip.pl20 KB (2,783 words) - 15:56, 25 August 2015
- less /home/mktrost/seqshop/setup.txt19 KB (2,551 words) - 10:27, 2 February 2017
- ...t is recommended that you use absolute paths (full path names, like “/home/mktrost/gotcloudReference” rather than just “gotcloudReference”). This examp25 KB (3,744 words) - 12:35, 10 January 2014
- :<pre>export EPACTS=/net/seqshop-server/home/mktrost/seqshop/epacts</pre>20 KB (2,538 words) - 14:15, 21 May 2015