Search results

• Understanding QPLOT output
  .../home/mktrost/gotcloudTutorialOut/alignment.recal/HG00096.recal.bam /home/mktrost/gotcloudTutorialOut/tmp/alignment.dedup/HG00096.dedup.bam .../home/mktrost/gotcloudTutorialOut/alignment.recal/HG00100.recal.bam /home/mktrost/gotcloudTutorialOut/tmp/alignment.dedup/HG00100.dedup.bam
  3 KB (299 words) - 10:03, 23 October 2014
• SeqShop: Aligning Your Own Genome, June 2014
  cp -r /home/mktrost/seqshop/inputs/2x/* ~/personal/. perl /home/mktrost/seqshop/inputs/checkIndex.pl ~/personal/align.2x.index
  11 KB (1,960 words) - 14:25, 13 November 2014
• Makefile.tool
  PATH_TO_BASE = /home/mktrost/statgen
  1 KB (245 words) - 17:20, 28 March 2011
• PhoneHome
  /home/mktrost/bamUtil_1.0.10/bin/bam convert --in myInFile.sam --out myOutFile.bam
  2 KB (329 words) - 16:24, 6 January 2014
• SeqShop: Calling Your Own Genome, December 2014
  source /net/seqshop-server/home/mktrost/seqshop/setupSS.txt cat /net/seqshop-server/home/mktrost/seqshop/setupSS.txt
  18 KB (2,806 words) - 12:16, 15 December 2014
• SeqShop: Ancestry On Your Own Genome, June 2014
  source /home/mktrost/seqshop/setup.2x.txt
  3 KB (464 words) - 14:32, 13 November 2014
• SeqShop: Estimates of Genetic Ancestry Practical, June 2014
  export GC=/home/mktrost/seqshop/gotcloud export REF=/home/mktrost/seqshop/reference/all
  10 KB (1,458 words) - 10:23, 2 February 2017
• SeqShop: Calling Your Own Genome, May 2015
  SS_DIR = /net/seqshop-server/home/mktrost/seqshop/singleSample export EPACTS=/net/seqshop-server/home/mktrost/seqshop/epacts/
  13 KB (2,110 words) - 12:10, 22 May 2015
• SeqShop: Estimates of Genetic Ancestry Practical, December 2014
  export GC=/net/seqshop-server/home/mktrost/seqshop/gotcloud export REF=/net/seqshop-server/home/mktrost/seqshop/gotcloud/gotcloud.ref
  10 KB (1,511 words) - 10:24, 2 February 2017
• SeqShop: Calling Your Own Genome, June 2014
  source /home/mktrost/seqshop/setup.2x.txt
  5 KB (775 words) - 14:30, 13 November 2014
• SeqShop: Ancestry On Your Own Genome, May 2015
  export SSREF=/net/seqshop-server/home/mktrost/seqshop/singleSample/ref
  5 KB (733 words) - 14:57, 21 May 2015
• SeqShop: Genetic Association Analysis Practical, December 2014
  source /net/seqshop-server/home/mktrost/seqshop/setup.txt less /net/seqshop-server/home/mktrost/seqshop/setup.txt
  21 KB (2,694 words) - 10:27, 2 February 2017
• SeqShop: Ancestry On Your Own Genome, December 2014
  source /net/seqshop-server/home/mktrost/seqshop/setupSS.txt
  5 KB (821 words) - 12:43, 12 December 2014
• SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
  source /net/seqshop-server/home/mktrost/seqshop/setup.txt less /net/seqshop-server/home/mktrost/seqshop/setup.txt
  19 KB (2,942 words) - 19:12, 30 March 2015
• SeqShop: Analysis of Structural Variation Practical, December 2014
  source /net/seqshop-server/home/mktrost/seqshop/setup.txt less /net/seqshop-server/home/mktrost/seqshop/setup.txt
  21 KB (2,922 words) - 17:09, 17 December 2014
• SeqShop: Sequence Mapping and Assembly Practical, December 2014
  source /net/seqshop-server/home/mktrost/seqshop/setup.txt cat /net/seqshop-server/home/mktrost/seqshop/setup.txt
  17 KB (2,608 words) - 16:35, 15 May 2015
• SeqShop: Analysis of Structural Variation Practical, June 2014
  source /home/mktrost/seqshop/setup.txt less /home/mktrost/seqshop/setup.txt
  17 KB (2,452 words) - 14:37, 13 November 2014
• BamUtil: filter
  open and prefetch reference genome /home/mktrost/data/human.g1k.v37.fa: done.
  10 KB (1,546 words) - 14:07, 6 January 2014
• SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
  source /home/mktrost/seqshop/setup.txt less /home/mktrost/seqshop/setup.txt
  20 KB (2,959 words) - 14:37, 13 November 2014
• SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
  source /home/mktrost/seqshop/setup.txt less /home/mktrost/seqshop/setup.txt
  22 KB (3,052 words) - 14:36, 13 November 2014

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