From Genome Analysis Wiki
Jump to navigationJump to search
303 bytes added
, 12:45, 31 October 2014
Line 186: |
Line 186: |
| # See [[#Monitoring Cluster Usage|Monitoring Cluster Usage]] if you are interested in monitoring the cluster usage as GotCloud runs | | # See [[#Monitoring Cluster Usage|Monitoring Cluster Usage]] if you are interested in monitoring the cluster usage as GotCloud runs |
| # When complete, GotCloud snpcall will indicate success/failure | | # When complete, GotCloud snpcall will indicate success/failure |
− | #* Look at the snpcall results, see: [[#GotCloud:_Amazon_Demo#Examining_SnpCall_Output|GotCloud: Amazon Demo -> Examining SnpCall Output]] | + | #* Look at the snpcall results, see: [[GotCloud:_Amazon_Demo#Examining_SnpCall_Output|GotCloud: Amazon Demo -> Examining SnpCall Output]] |
| | | |
| ==== Run GotCloud Indel Demo ==== | | ==== Run GotCloud Indel Demo ==== |
| # Run GotCloud indel | | # Run GotCloud indel |
| #* <pre>gotcloud indel --conf example/test.conf --outdir output --numjobs 8 --batchtype sgei</pre> | | #* <pre>gotcloud indel --conf example/test.conf --outdir output --numjobs 8 --batchtype sgei</pre> |
| + | #** The ubuntu user is setup to have the gotcloud program and tools in its path, so you can just type the program name and it will be found |
| + | #** There is enough space in /home/ubuntu to put the Demo output |
| + | #*** /home/ubuntu is visible from all nodes in the cluster |
| + | #** This will take a few minutes to run. |
| | | |
| ==== Terminate the Demo Cluster ==== | | ==== Terminate the Demo Cluster ==== |
Line 196: |
Line 200: |
| #* Since this is just a demo, we don't have to worry about the data getting deleted upon termination | | #* Since this is just a demo, we don't have to worry about the data getting deleted upon termination |
| #* <pre>starcluster terminate mycluster</pre> | | #* <pre>starcluster terminate mycluster</pre> |
− |
| |
| | | |
| == Old Instructions== | | == Old Instructions== |