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32 bytes removed ,  15:56, 19 November 2012
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<code>
 
<code>
   '''starcluster start -c <font color='red'>westcluster</font> myseq-example'''
+
   '''starcluster start -c <font color='red'>myexample</font> myseq-example'''
 
   StarCluster - (http://web.mit.edu/starcluster) (v. 0.93.3)
 
   StarCluster - (http://web.mit.edu/starcluster) (v. 0.93.3)
 
   Software Tools for Academics and Researchers (STAR)
 
   Software Tools for Academics and Researchers (STAR)
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   >>> Cluster template settings are valid
 
   >>> Cluster template settings are valid
 
   >>> Starting cluster...
 
   >>> Starting cluster...
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      [lines deleted]
 +
  >>> Mounting EBS volume vol-32273514 on /gotcloud...
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  >>> Mounting EBS volume vol-36788522 on /mydata...
 
       [lines deleted]
 
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</code>
 
</code>
   −
 
+
When this completes, you are ready to run the GotCloud software on your data.
'''Set Up Master Node, Login as root'''
+
Make sure you have defined and mounted volumes for your sequence data and the
 
+
output steps of the aligner and umake.
Login as root and set up the Pipeline software like is says in [[Pipeline Debian Package|debian package]].
+
These volumes (as well as /gotcloud) should be available on each node.
    
<code>
 
<code>
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     [lines deleted]
 
     [lines deleted]
 
   
 
   
   '''mkdir debs'''
+
   '''df -h'''
  '''cd debs'''
  −
  '''wget ftp://share.sph.umich.edu/biopipe/current-align.deb'''
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    [lines deleted]
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  '''wget ftp://share.sph.umich.edu/biopipe/current-umake.deb'''
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    [lines deleted]
  −
  −
  '''dpkg -i debs/current-align*.deb debs/current-umake*.deb'''
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    [lines deleted]
   
</code>
 
</code>
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