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32 bytes removed
, 15:56, 19 November 2012
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| <code> | | <code> |
− | '''starcluster start -c <font color='red'>westcluster</font> myseq-example''' | + | '''starcluster start -c <font color='red'>myexample</font> myseq-example''' |
| StarCluster - (http://web.mit.edu/starcluster) (v. 0.93.3) | | StarCluster - (http://web.mit.edu/starcluster) (v. 0.93.3) |
| Software Tools for Academics and Researchers (STAR) | | Software Tools for Academics and Researchers (STAR) |
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| >>> Cluster template settings are valid | | >>> Cluster template settings are valid |
| >>> Starting cluster... | | >>> Starting cluster... |
| + | [lines deleted] |
| + | >>> Mounting EBS volume vol-32273514 on /gotcloud... |
| + | >>> Mounting EBS volume vol-36788522 on /mydata... |
| [lines deleted] | | [lines deleted] |
| </code> | | </code> |
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− | | + | When this completes, you are ready to run the GotCloud software on your data. |
− | '''Set Up Master Node, Login as root'''
| + | Make sure you have defined and mounted volumes for your sequence data and the |
− | | + | output steps of the aligner and umake. |
− | Login as root and set up the Pipeline software like is says in [[Pipeline Debian Package|debian package]].
| + | These volumes (as well as /gotcloud) should be available on each node. |
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| <code> | | <code> |
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| [lines deleted] | | [lines deleted] |
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− | '''mkdir debs''' | + | '''df -h''' |
− | '''cd debs'''
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− | '''wget ftp://share.sph.umich.edu/biopipe/current-align.deb'''
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− | [lines deleted]
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− | '''wget ftp://share.sph.umich.edu/biopipe/current-umake.deb'''
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− | [lines deleted]
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− | '''dpkg -i debs/current-align*.deb debs/current-umake*.deb'''
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− | [lines deleted]
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| </code> | | </code> |