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Talk:GotCloud (view source)

Revision as of 16:40, 1 April 2016

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The main page is http://genome.sph.umich.edu/wiki/GotCloud .
 
The main page is http://genome.sph.umich.edu/wiki/GotCloud .
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Setup instructions and documentation:
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Pages that document or help with installation:
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
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** http://genome.sph.umich.edu/wiki/StarCluster
 
** http://genome.sph.umich.edu/wiki/StarCluster
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Documentation of steps in the GotCloud pipeline:
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Pages that document steps in the GotCloud pipeline:
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
 
** http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Sub-Pipelines
 
** http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Sub-Pipelines
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Pipeline
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* http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options
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** http://genome.sph.umich.edu/wiki/GotCloud:_Variant_Calling_Options (sub-page)
 
* http://genome.sph.umich.edu/wiki/GotCloud:_GenomeSTRiP_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_GenomeSTRiP_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Creating_a_New_Pipeline
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Creating_a_New_Pipeline
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Documentation of pieces of GotCloud:
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Pages that document pieces of GotCloud:
 
* http://genome.sph.umich.edu/wiki/PileupBasedVariantCalling
 
* http://genome.sph.umich.edu/wiki/PileupBasedVariantCalling
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
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* http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)
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Pages that explain configuration:
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Configuration:
   
* http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers <code>BATCH_OPTS</code>)
 
* http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers <code>BATCH_OPTS</code>)
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Pages for developers:
 
Pages for developers:
 
* http://genome.sph.umich.edu/wiki/Releasing_GotCloud
 
* http://genome.sph.umich.edu/wiki/Releasing_GotCloud
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* http://genome.sph.umich.edu/wiki/Git_FAQs
 
* http://genome.sph.umich.edu/wiki/Creating_an_AMI_on_EC2
 
* http://genome.sph.umich.edu/wiki/Creating_an_AMI_on_EC2
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Other:
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Other pages:
 
* http://genome.sph.umich.edu/wiki/GotCloud:_FAQs
 
* http://genome.sph.umich.edu/wiki/GotCloud:_FAQs
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Versions documents old versions
 
* http://genome.sph.umich.edu/wiki/GotCloud:_Versions documents old versions
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