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, 00:25, 8 January 2016
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| The main page is http://genome.sph.umich.edu/wiki/GotCloud . | | The main page is http://genome.sph.umich.edu/wiki/GotCloud . |
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− | Setup instructions and documentation:
| + | Pages that document or help with installation: |
| * http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases | | * http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases |
| * http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases | | * http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases |
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| ** http://genome.sph.umich.edu/wiki/StarCluster | | ** http://genome.sph.umich.edu/wiki/StarCluster |
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− | Documentation of steps in the GotCloud pipeline:
| + | Pages that document steps in the GotCloud pipeline: |
| * http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline | | * http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline |
| ** http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Sub-Pipelines | | ** http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Sub-Pipelines |
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| * http://genome.sph.umich.edu/wiki/GotCloud:_Creating_a_New_Pipeline | | * http://genome.sph.umich.edu/wiki/GotCloud:_Creating_a_New_Pipeline |
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− | Documentation of pieces of GotCloud:
| + | Pages that document pieces of GotCloud: |
| * http://genome.sph.umich.edu/wiki/PileupBasedVariantCalling | | * http://genome.sph.umich.edu/wiki/PileupBasedVariantCalling |
| * http://genome.sph.umich.edu/wiki/GotCloud:_Filters | | * http://genome.sph.umich.edu/wiki/GotCloud:_Filters |
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| * http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions) | | * http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions) |
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− | Configuration:
| + | Pages that explain configuration: |
| * http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers <code>BATCH_OPTS</code>) | | * http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers <code>BATCH_OPTS</code>) |
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| * http://genome.sph.umich.edu/wiki/Creating_an_AMI_on_EC2 | | * http://genome.sph.umich.edu/wiki/Creating_an_AMI_on_EC2 |
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− | Other: | + | Other pages: |
| * http://genome.sph.umich.edu/wiki/GotCloud:_FAQs | | * http://genome.sph.umich.edu/wiki/GotCloud:_FAQs |
| * http://genome.sph.umich.edu/wiki/GotCloud:_Versions documents old versions | | * http://genome.sph.umich.edu/wiki/GotCloud:_Versions documents old versions |