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Revision as of 21:27, 24 September 2012
, 21:27, 24 September 2012no edit summary
== Expected output ==
== Expected output ==
EPACTS produces a number of files and plots.
EPACTS produces a number of files and plots.
1. '''test.epacts.gz''' contains all the association results.
1. '''test.epacts.gz''' contains all the association results.
20 76771 76771 20:76771_C/T_Nonsynonymous:DEFB125 266 3 1 0.0056391 0.68484 0.40587
20 76771 76771 20:76771_C/T_Nonsynonymous:DEFB125 266 3 1 0.0056391 0.68484 0.40587
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2. '''test.epacts.top5000''' contains the top 5000 associated variants ordered by p-value.
2. '''test.epacts.top5000''' contains the top 5000 associated variants ordered by p-value.
<pre>$ head out/test.single.b.score.epacts.top5000
<pre>$ head out/test.single.b.score.epacts.top5000
#CHROM BEGIN END MARKER_ID NS AC CALLRATE MAF PVALUE SCORE
#CHROM BEGIN END MARKER_ID NS AC CALLRATE MAF PVALUE SCORE
