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Test EPACTS for DIAGRAM (view source)

Revision as of 17:14, 26 September 2012

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Visit http://genome.sph.umich.edu/wiki/EPACTS for more detailed documentation
 
Visit http://genome.sph.umich.edu/wiki/EPACTS for more detailed documentation
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To view options for single variant testing only type in:</pre>
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To view options for single variant testing only type in:</pre>  
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$ epacts2/epacts single -help
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<pre>
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Usage:
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epacts single [options]
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<br>
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Required Options (Run epacts single -man or see wiki for more info):
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-vcf STR Input VCF file (tabixed and bgzipped)
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-ped STR Input PED file for phenotypes and covariates
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-out STR Prefix of output files
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-test STR Statistical test to use
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...
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</pre>
      
= Getting started in EPACTS with an example =
 
= Getting started in EPACTS with an example =
Clement Ma
216

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