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Test EPACTS for DIAGRAM (view source)

Revision as of 17:16, 24 September 2012

13 bytes added ,  17:16, 24 September 2012
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# Download  EPACTS  
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= Download  EPACTS =
    
EPACTS is available for download [http://www.sph.umich.edu/csg/kang/epacts/download/index.html here].
 
EPACTS is available for download [http://www.sph.umich.edu/csg/kang/epacts/download/index.html here].
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# Install EPACTS
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= Install EPACTS =
    
Uncompress EPACTS package to the directory you would like to install   
 
Uncompress EPACTS package to the directory you would like to install   
 
   tar xzvf epacts2.noref_binary.2012_07_03.tar.gz
 
   tar xzvf epacts2.noref_binary.2012_07_03.tar.gz
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# Once installed, test out the software by running a quick example using the test data provided in the "example" directory. The example VCF and PED files are:  
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= Example =
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Once installed, test out the software by running a quick example using the test data provided in the "example" directory. The example VCF and PED files are:  
 
<pre>${EPACTS_DIRECTORY}/example/1000G_exome_chr20_example_softFiltered.calls.vcf.gz
 
<pre>${EPACTS_DIRECTORY}/example/1000G_exome_chr20_example_softFiltered.calls.vcf.gz
  
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