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, 17:15, 26 September 2012
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| Visit http://genome.sph.umich.edu/wiki/EPACTS for more detailed documentation | | Visit http://genome.sph.umich.edu/wiki/EPACTS for more detailed documentation |
| + | </pre> |
| + | <br> To view options for single variant testing only type in: |
| + | <pre>$ epacts2/epacts single -help |
| + | Usage: |
| + | epacts single [options] |
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− | To view options for single variant testing only type in:</pre>
| + | Required Options (Run epacts single -man or see wiki for more info): |
− | | + | -vcf STR Input VCF file (tabixed and bgzipped) |
− | | + | -ped STR Input PED file for phenotypes and covariates |
− | <br> | + | -out STR Prefix of output files |
| + | -test STR Statistical test to use |
| + | </pre> |
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| = Getting started in EPACTS with an example = | | = Getting started in EPACTS with an example = |