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, 13:12, 15 October 2010
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| == Input Data == | | == Input Data == |
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− | To get started, you will need glf files in the standard format [http://samtools.sourceforge.net/SAM1.pdf glf format]. | + | To get started, you will need glf files in the standard format [http://samtools.sourceforge.net/SAM1.pdf glf format]. Sample files are available at [ftp://share.sph.umich.edu/1000genomes/pilot1/examples/glf.tgz sample glf files]. |
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| If you do not have glf files, you can generate them from bam files (bam format also specified in [http://samtools.sourceforge.net/SAM1.pdf glf format bam format]) using the following command line: | | If you do not have glf files, you can generate them from bam files (bam format also specified in [http://samtools.sourceforge.net/SAM1.pdf glf format bam format]) using the following command line: |