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, 12:06, 3 February 2012
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| === Required Software === | | === Required Software === |
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− | In order to run this exercise, you should have BWA ([http://bio-bwa.sourceforge.net available from Sourceforge]), samtools ([http://samtools.sourceforge.net also from Sourceforge]) and thunderVCF ([[UMAKE|included in the UMAKE pipeline download]]) installed. The examples are tested in in bwa 0.6.1, samtools 0.1.18, TrioCaller 0.1.1. The previous version might be not working. | + | In order to run this exercise, you should have BWA ([http://bio-bwa.sourceforge.net available from Sourceforge]), samtools ([http://samtools.sourceforge.net also from Sourceforge]) and thunderVCF ([[UMAKE|included in the UMAKE pipeline download]]) installed. The examples are tested in in bwa 0.6.1, samtools 0.1.18, TrioCaller 0.1.1. The previous version might be not working at certain steps. |
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| == Building an Index for Short Read Alignment == | | == Building an Index for Short Read Alignment == |