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Jump to navigationJump to search→Converting Alignments to BAM format
samtools view -uhS - | samtools sort -m 2000000000 - bams/SAMPLE1
samtools view -uhS - | samtools sort -m 2000000000 - bams/SAMPLE1
The result BAM file uses a compact binary format to represent the
You can check the use of parameters in the bwa manual. The result BAM file uses a compact binary format to represent the
alignment of each short read to the genome. You can view the contents
alignment of each short read to the genome. You can view the contents
of the file using the <code>samtools view</code> command, like so:
of the file using the <code>samtools view</code> command, like so:
