Changes

and <code>samtools tview</code> commands. While the <code>tview</code> generates prettier output,

and <code>samtools tview</code> commands. While the <code>tview</code> generates prettier output,

it is not compatible with all screens. For example, to view reads overlapping  

it is not compatible with all screens. For example, to view reads overlapping  

starting at position 43,000,000 on chromosome 20, we could run:

starting at position 2,100,000 on chromosome 20, we could run:

   samtools tview bams/NA20589.bam ref/human_g1k_v37_chr20.fa

   samtools tview bams/SAMPLE1.bam ref/human_g1k_v37_chr20.fa

Then, type "g 20:43000000"

Then, type "g 20:2100000"

So let's recap: we have mapped reads to genome, converted them from a BWA specific format to a more  

So let's recap: we have mapped reads to genome, converted them from a BWA specific format to a more