Changes

Here is how that might work:

Here is how that might work:

   bin/TrioCaller --shotgun mpileup/chr20.vcf --ped --phase --dosage -r 10                --prefix triocaller/chr20.thunder

   bin/TrioCaller --shotgun mpileup/chr20.vcf --pedfile example.ped --dosage -r 20 --prefix triocaller/chr20.triocaller

Again, you can review the contents of the updated VCF file using the more command:

Again, you can review the contents of the updated VCF file using the more command:

   more triocaller/chr20.vcf

   more triocaller/chr20.triocaller.vcf