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Our dataset consists of 40 individuals, which have been sequenced at an average depth of 3x.
Our dataset consists of 40 individuals, which have been sequenced at an average depth of 3x.
To conserve time and disk-space, our analysis will focus on a small region on chromosome 20. We will first map reads for a single individual (labeled NA20589), combine the results with mapped reads from the other 30 individuals to generate a list of polymorphic sites and estimate accurate genotypes at each of these sites.
To conserve time and disk-space, our analysis will focus on a small region on chromosome 20. We will first map reads for a single individual (labeled SAMPLE1), combine the results with mapped reads from the other 30 individuals to generate a list of polymorphic sites and estimate accurate genotypes at each of these sites.
The example dataset we'll be using is included in this tar-ball [http://www.sph.umich.edu/csg/abecasis/downloads/TrioCaller-2012-01-28.tar.gz) [TrioCaller-2012-01-28.tar.gz].
The example dataset we'll be using is included in this tar-ball [http://www.sph.umich.edu/csg/abecasis/downloads/TrioCaller-2012-01-28.tar.gz) [TrioCaller-2012-01-28.tar.gz].
