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In most cases, the next step would be to remove duplicate reads and to ensure that base quality scores are properly calibrated. To save time, we'll skip those steps now.
In most cases, the next step would be to remove duplicate reads and to ensure that base quality scores are properly calibrated. To save time, we'll skip those steps now.
== Initial set of variant calls ==
== Calling variants and Inferring genotypes ==
=== Initial set of variant calls ===
You probably thought the initial mapping process was quite convoluted ... you'll be glad to know that
You probably thought the initial mapping process was quite convoluted ... you'll be glad to know that
