Changes

TrioCaller (view source)

40 bytes removed , 14:12, 3 February 2012

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Available Options

−

Shotgun Sequences : --shotgun [],

+

Shotgun Sequences : --shotgun [], --pedfile []

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--pedfile []

+

Markov Sampler : --seed [], --burnin, --rounds []

−

Markov Sampler : --seed [~~123456~~], --burnin, --rounds [2]

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Haplotyper : --states, --errorRate [], --compact

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Haplotyper : --states, --errorRate [~~0.01~~], --compact

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Phasing : --randomPhase [], --inputPhased, --refPhased

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Phasing : --randomPhase [ON], --inputPhased, --refPhased

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Imputation : --geno, --quality, --dosage [], --probs

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Imputation : --geno, --quality, --dosage [ON], --probs

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Output Files : --prefix [], --phase [], --interimInterval

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Output Files : --prefix [], --phase [ON], --interimInterval

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