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, 14:16, 3 February 2012
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− | --shotgun Standard VCF 4.0 file LINK | + | Explanation of Options |
− | --pedfile Pedigree file in MERLIN format LINK | + | --shotgun: Standard VCF 4.0 file LINK --pedfile: Pedigree file in MERLIN format LINK |
− | --randomPhase The initial haplotypes are inferred from the single marker | + | --randomPhase The initial haplotypes are inferred from the single marker |
− | --inputPhased The initial haplotypes are directly from input VCF file | + | --inputPhased The initial haplotypes are directly from input VCF file |
− | --refPhased The initial haplotypes are built on reference alleles from VCF file | + | --refPhased The initial haplotypes are built on reference alleles from VCF file |
− | --interimInterval The number of rounds for interim outputs | + | --interimInterval The number of rounds for interim outputs |
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