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Here is how that might work:
Here is how that might work:
bin/TrioCaller --shotgun mpileup/chr20.vcf --pedfile example.ped --dosage -r 20 --prefix triocaller/chr20.triocaller
mkdir triocaller
bin/TrioCaller --shotgun mpileup/chr20.vcf --pedfile example.ped -r 20 --prefix triocaller/chr20.triocaller
Again, you can review the contents of the updated VCF file using the more command:
Again, you can review the contents of the updated VCF file using the more command:
more triocaller/chr20.triocaller.vcf
more triocaller/chr20.triocaller.vcf
