Changes

               --burnin:      The number of rounds ignored at the beginning in MCMC step

               --burnin:      The number of rounds ignored at the beginning in MCMC step

         --randomPhase:      The initial haplotypes are inferred from the single marker

         --randomPhase:      The initial haplotypes are inferred from the single marker

          --inputPhased:     The initial haplotypes are directly from input VCF file

        --inputPhased:     The initial haplotypes are directly from input VCF file

          --refPhased:     The initial haplotypes are built on reference alleles from VCF file

            --refPhased:     The initial haplotypes are built on reference alleles from VCF file

               --prefix:      The prefix of output file   

               --prefix:      The prefix of output file   

   --interimInterval:      The number of rounds for interim outputs

   --interimInterval:      The number of rounds for interim outputs