Changes

== TrioCaller ==

== Introduction ==

We will illustrate how TrioCaller works in sequence data including trios and unrelated samples. We will start from the scratch and walk through all necessary steps  

We will illustrate how TrioCaller works in sequence data including trios and unrelated samples. We will start from the scratch and walk through all necessary steps  

Here is how that might work:

Here is how that might work:

  thunderVCF --shotgun mpileup/chr20.vcf --phase --dosage -r 10 --prefix thunder/chr20.thunder

  TrioCaller --shotgun mpileup/chr20.vcf --ped --phase --dosage -r 10 --prefix triocaller/chr20.thunder

Again, you can review the contents of the updated VCF file using the more command:

Again, you can review the contents of the updated VCF file using the more command:

   more thunder/chr20.vcf

   more triocaller/chr20.vcf