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, 11:54, 3 February 2012
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| == Example Dataset == | | == Example Dataset == |
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− | Our dataset consists of 40 individuals, which have been sequenced at an average depth of about 4x. | + | Our dataset consists of 40 individuals, which have been sequenced at an average depth of 3x. |
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| To conserve time and disk-space, our analysis will focus on a small region on chromosome 20. We will first map reads for a single individual (labeled NA20589), combine the results with mapped reads from the other 30 individuals to generate a list of polymorphic sites and estimate accurate genotypes at each of these sites. | | To conserve time and disk-space, our analysis will focus on a small region on chromosome 20. We will first map reads for a single individual (labeled NA20589), combine the results with mapped reads from the other 30 individuals to generate a list of polymorphic sites and estimate accurate genotypes at each of these sites. |