Changes

                 --seed:    Seed for sampling, default 123456

                 --seed:    Seed for sampling, default 123456

               --burnin:    The number of rounds ignored at the beginning of sampling

               --burnin:    The number of rounds ignored at the beginning of sampling

            --rounds:    The total number of iterations

              --rounds:    The total number of iterations

               --states:    The number of haplotyes used in the state space. The default is the maximum number:  2*(number of founders -1).

               --states:    The number of haplotyes used in the state space. The default is the maximum number:  2*(number of founders -1).

         --randomPhase:    The initial haplotypes are inferred from the single marker

         --randomPhase:    The initial haplotypes are inferred from the single marker