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The average sequence depth is ~3x.
The average sequence depth is ~3x.
To conserve time and disk-space, our analysis will focus on a small region on chromosome 20 around 2,000,000. We will first map reads for a single individual (labeled SAMPLE1), combine the results with mapped reads from the other 30 individuals to generate a list of polymorphic sites and estimate accurate genotypes at each of these sites.
To conserve time and disk-space, our analysis will focus on a small region on chromosome 20 around 2,000,000. We will first map reads for a single individual (labeled SAMPLE1). Then we combine the results with mapped reads from all individuals to generate a list of polymorphic sites and estimate accurate genotypes at each of these sites.
=== Required Software ===
=== Required Software ===
